miRNA display CGI


Results 21 - 40 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23581 3' -57.9 NC_005261.1 + 54606 0.66 0.8503
Target:  5'- cGCGCUg----GACCUC-GCGCUgGACCa -3'
miRNA:   3'- -CGCGGacuagCUGGAGaCGCGG-CUGG- -5'
23581 3' -57.9 NC_005261.1 + 137039 0.66 0.8503
Target:  5'- cGCGCCgcgccCGGCCcCgGCcCCGGCCg -3'
miRNA:   3'- -CGCGGacua-GCUGGaGaCGcGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 55881 0.66 0.8503
Target:  5'- cGCGCCgagcCGACg--UGCGCCGGCa -3'
miRNA:   3'- -CGCGGacuaGCUGgagACGCGGCUGg -5'
23581 3' -57.9 NC_005261.1 + 103915 0.66 0.847959
Target:  5'- cGCGCCgccaggucggGcgCGGCgUCUGCcagacgcugcagcgGCgCGACCg -3'
miRNA:   3'- -CGCGGa---------CuaGCUGgAGACG--------------CG-GCUGG- -5'
23581 3' -57.9 NC_005261.1 + 87248 0.66 0.842432
Target:  5'- cGCGCCgccGUCGGCCgagagguuUCgcGCGCCguagucGACCa -3'
miRNA:   3'- -CGCGGac-UAGCUGG--------AGa-CGCGG------CUGG- -5'
23581 3' -57.9 NC_005261.1 + 66150 0.66 0.842432
Target:  5'- cGCGCCaccucgugGAcuaCGACCUg-GUGCCGAgCCg -3'
miRNA:   3'- -CGCGGa-------CUa--GCUGGAgaCGCGGCU-GG- -5'
23581 3' -57.9 NC_005261.1 + 74881 0.66 0.842432
Target:  5'- cGCGCCaccgUGAacccgUgGGCCUCgcaGCGCCacucguacggcGACCg -3'
miRNA:   3'- -CGCGG----ACU-----AgCUGGAGa--CGCGG-----------CUGG- -5'
23581 3' -57.9 NC_005261.1 + 58830 0.66 0.842432
Target:  5'- cGgGCCUGcUCGACUacagcgagaUCcaGCGCCGcaACCa -3'
miRNA:   3'- -CgCGGACuAGCUGG---------AGa-CGCGGC--UGG- -5'
23581 3' -57.9 NC_005261.1 + 39377 0.66 0.842432
Target:  5'- gGCgGCCgggGAgggCGGCC-CUgGCGgCGACCc -3'
miRNA:   3'- -CG-CGGa--CUa--GCUGGaGA-CGCgGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 118133 0.66 0.842432
Target:  5'- cGCGCCgc-UCGGCCggcucgCgcaGaCGCUGGCCg -3'
miRNA:   3'- -CGCGGacuAGCUGGa-----Ga--C-GCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 126460 0.66 0.842432
Target:  5'- cGCGCCaGcgCGcucGCCUCgcgguaguaccGCGCCG-CCa -3'
miRNA:   3'- -CGCGGaCuaGC---UGGAGa----------CGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 75546 0.66 0.842432
Target:  5'- uGCGCCgGcgCGugCagCUggcggacgugGCGCUGGCCu -3'
miRNA:   3'- -CGCGGaCuaGCugGa-GA----------CGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 122414 0.66 0.842432
Target:  5'- gGUGCCUG-UUGcuCUUCUggguggcgGCGCUGGCCg -3'
miRNA:   3'- -CGCGGACuAGCu-GGAGA--------CGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 91184 0.66 0.842432
Target:  5'- cCGCCgGGcuUCGcgcGCUUCgGCGCCGugCu -3'
miRNA:   3'- cGCGGaCU--AGC---UGGAGaCGCGGCugG- -5'
23581 3' -57.9 NC_005261.1 + 51100 0.66 0.842432
Target:  5'- uCGCCgucgCGGCCUUUGaCGUcgCGGCCg -3'
miRNA:   3'- cGCGGacuaGCUGGAGAC-GCG--GCUGG- -5'
23581 3' -57.9 NC_005261.1 + 50954 0.66 0.842432
Target:  5'- cGCgGCCgUGGUCGACUaCgGCGCgcgaaaccucuCGGCCg -3'
miRNA:   3'- -CG-CGG-ACUAGCUGGaGaCGCG-----------GCUGG- -5'
23581 3' -57.9 NC_005261.1 + 86596 0.66 0.842432
Target:  5'- gGCGCCguccUUGGCgUCggccGCGCCG-CCg -3'
miRNA:   3'- -CGCGGacu-AGCUGgAGa---CGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 129061 0.66 0.842432
Target:  5'- cGCGCCcuacguguuUGGUCGAUCgucCUGCaaccuucggggGCUGAUCg -3'
miRNA:   3'- -CGCGG---------ACUAGCUGGa--GACG-----------CGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 91127 0.66 0.840836
Target:  5'- cGCGCCgcggccgaGGCCUCagccGUGCCGcCCg -3'
miRNA:   3'- -CGCGGacuag---CUGGAGa---CGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 42106 0.66 0.840836
Target:  5'- cCGCCgcaGGUCGACCauggccagcgacgUCccgacaagcagguUGCGCCgGGCCg -3'
miRNA:   3'- cGCGGa--CUAGCUGG-------------AG-------------ACGCGG-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.