Results 21 - 40 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23582 | 5' | -57.6 | NC_005261.1 | + | 93936 | 0.69 | 0.598497 |
Target: 5'- gGCAgCG-GCCCUGGCccgccGCUgGCGGCGg -3' miRNA: 3'- aUGUaGCuCGGGACCG-----UGA-CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 104744 | 0.69 | 0.608782 |
Target: 5'- gUGCucgCGGGCCCcgcgagcgGGCccgGCUGCGGCGg -3' miRNA: 3'- -AUGua-GCUCGGGa-------CCG---UGACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 29892 | 0.69 | 0.623209 |
Target: 5'- gGCggCG-GCCCUGGCGCgggucgcggagcacGCGGCGg -3' miRNA: 3'- aUGuaGCuCGGGACCGUGa-------------CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 73773 | 0.69 | 0.629398 |
Target: 5'- ----aCGAGgCgCUGGC-CUGCGACGUg -3' miRNA: 3'- auguaGCUCgG-GACCGuGACGCUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 92574 | 0.69 | 0.629398 |
Target: 5'- cGCGUUGAucacGCCCgcugGGCACUGCuccGGCGc -3' miRNA: 3'- aUGUAGCU----CGGGa---CCGUGACG---CUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 57956 | 0.69 | 0.636619 |
Target: 5'- gUGCuGUCGGGCggccuggagacguaCCUGGCGC-GCGGCGg -3' miRNA: 3'- -AUG-UAGCUCG--------------GGACCGUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 62293 | 0.69 | 0.639713 |
Target: 5'- cACGUCGGcGCCgCgcgGGCGC-GCGGCGg -3' miRNA: 3'- aUGUAGCU-CGG-Ga--CCGUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 98236 | 0.69 | 0.639713 |
Target: 5'- gGCAUCGAuuuccgcgGCCCggugcGGCGCgucagGCGGCGc -3' miRNA: 3'- aUGUAGCU--------CGGGa----CCGUGa----CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 20556 | 0.69 | 0.639713 |
Target: 5'- cGCcgCGGGCCCggccgGGCGCgGCGGgGc -3' miRNA: 3'- aUGuaGCUCGGGa----CCGUGaCGCUgCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 54254 | 0.69 | 0.650022 |
Target: 5'- gUGCAgCGcGCCCUGGCGCcGCGcACa- -3' miRNA: 3'- -AUGUaGCuCGGGACCGUGaCGC-UGca -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 102291 | 0.68 | 0.660317 |
Target: 5'- gGC-UCGGGCCUgGGCgcccgcuggGCUGCGGCGc -3' miRNA: 3'- aUGuAGCUCGGGaCCG---------UGACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 76484 | 0.68 | 0.660317 |
Target: 5'- cGCGgacccCGAGCCCUcGGCGCUcGCGcGCGc -3' miRNA: 3'- aUGUa----GCUCGGGA-CCGUGA-CGC-UGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 80671 | 0.68 | 0.670589 |
Target: 5'- gGCGcCgGAGCCg-GGCGCgUGCGACGUg -3' miRNA: 3'- aUGUaG-CUCGGgaCCGUG-ACGCUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 51160 | 0.68 | 0.670589 |
Target: 5'- cUACGUgcUGGGCCCggccgcggUGGCGCUGCG-UGUg -3' miRNA: 3'- -AUGUA--GCUCGGG--------ACCGUGACGCuGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 99497 | 0.68 | 0.670589 |
Target: 5'- gGCG-CGGGCCCgGGCuCUGCGgGCGc -3' miRNA: 3'- aUGUaGCUCGGGaCCGuGACGC-UGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 95720 | 0.68 | 0.670589 |
Target: 5'- cGCGcUCGGGCCCgccGCGCUcaGCGGCGc -3' miRNA: 3'- aUGU-AGCUCGGGac-CGUGA--CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 57425 | 0.68 | 0.680829 |
Target: 5'- cGCcgCGAGCCCaggaUGcGCACccgcGCGACGg -3' miRNA: 3'- aUGuaGCUCGGG----AC-CGUGa---CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 118612 | 0.68 | 0.680829 |
Target: 5'- cGCuGUCGGccguuGCCCUGGcCGCcGCGGCGg -3' miRNA: 3'- aUG-UAGCU-----CGGGACC-GUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 10886 | 0.68 | 0.691028 |
Target: 5'- ----cCGAGCCC-GGCGCcaacgGCGGCGg -3' miRNA: 3'- auguaGCUCGGGaCCGUGa----CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 107184 | 0.68 | 0.691028 |
Target: 5'- gGCggCGuAGCCCUGcagccGCGCgaagGCGGCGUg -3' miRNA: 3'- aUGuaGC-UCGGGAC-----CGUGa---CGCUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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