miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 5' -57.6 NC_005261.1 + 137923 0.69 0.598497
Target:  5'- cGCGagCGGGCCCggcugcGGCggcgGCUGCGGCGg -3'
miRNA:   3'- aUGUa-GCUCGGGa-----CCG----UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 135762 0.7 0.56782
Target:  5'- ----cCGAGCCCUGGCGCc-CGGCGc -3'
miRNA:   3'- auguaGCUCGGGACCGUGacGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 135012 0.66 0.80686
Target:  5'- cGCggCGGGCCCgcacgcGGcCGCgGCGGCGa -3'
miRNA:   3'- aUGuaGCUCGGGa-----CC-GUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 134925 0.67 0.760506
Target:  5'- gACAUgCGGGCCggGGCACcGCGGgCGg -3'
miRNA:   3'- aUGUA-GCUCGGgaCCGUGaCGCU-GCa -5'
23582 5' -57.6 NC_005261.1 + 133641 0.68 0.711268
Target:  5'- -----gGAGCCCUGGCGCcggGgGGCGc -3'
miRNA:   3'- auguagCUCGGGACCGUGa--CgCUGCa -5'
23582 5' -57.6 NC_005261.1 + 130228 0.66 0.815684
Target:  5'- aGCGUCG-GCCCgcucaGGCGCcGCGccaGCGg -3'
miRNA:   3'- aUGUAGCuCGGGa----CCGUGaCGC---UGCa -5'
23582 5' -57.6 NC_005261.1 + 127794 0.66 0.797876
Target:  5'- aGCggCGGGCC--GGCGCcGCGGCGg -3'
miRNA:   3'- aUGuaGCUCGGgaCCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 124907 0.68 0.701177
Target:  5'- cGCG-CGAGUgCgagGGCGCUGCGuACGa -3'
miRNA:   3'- aUGUaGCUCGgGa--CCGUGACGC-UGCa -5'
23582 5' -57.6 NC_005261.1 + 119607 0.72 0.450756
Target:  5'- gUAUGcCGAGCCgCUGuacguGCACUGCGGCGUg -3'
miRNA:   3'- -AUGUaGCUCGG-GAC-----CGUGACGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 118680 0.73 0.414702
Target:  5'- gGCggCGGGCgCUGGCGCacgcGCGGCGUg -3'
miRNA:   3'- aUGuaGCUCGgGACCGUGa---CGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 118612 0.68 0.680829
Target:  5'- cGCuGUCGGccguuGCCCUGGcCGCcGCGGCGg -3'
miRNA:   3'- aUG-UAGCU-----CGGGACC-GUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 117615 0.67 0.760506
Target:  5'- gGCAgucccggaugCGGGCCaggGGCGCUGUgucGACGUa -3'
miRNA:   3'- aUGUa---------GCUCGGga-CCGUGACG---CUGCA- -5'
23582 5' -57.6 NC_005261.1 + 116424 0.73 0.405968
Target:  5'- cGCcgCGGGCCCggcccGGCcggcgGCUGCGGCGg -3'
miRNA:   3'- aUGuaGCUCGGGa----CCG-----UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 115403 0.68 0.691028
Target:  5'- ----cCGAGCCC-GGCGCcaacgGCGGCGg -3'
miRNA:   3'- auguaGCUCGGGaCCGUGa----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 113305 0.66 0.788739
Target:  5'- cUGCcgCGGGCCUgGGCccgGCUGCG-CGa -3'
miRNA:   3'- -AUGuaGCUCGGGaCCG---UGACGCuGCa -5'
23582 5' -57.6 NC_005261.1 + 112435 1.06 0.002525
Target:  5'- gUACAUCGAGCCCUGGCACUGCGACGUg -3'
miRNA:   3'- -AUGUAGCUCGGGACCGUGACGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 110199 0.68 0.691028
Target:  5'- gACGUUGAGgaggCCUGGCGCaaccucgGCGACGc -3'
miRNA:   3'- aUGUAGCUCg---GGACCGUGa------CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 108983 0.66 0.779459
Target:  5'- gGCggCG-GCCCgucgcgcGGCGCcGCGGCGUa -3'
miRNA:   3'- aUGuaGCuCGGGa------CCGUGaCGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 108731 0.67 0.760506
Target:  5'- cGCG-CGGGCCagcggcGGCGCcGCGGCGUc -3'
miRNA:   3'- aUGUaGCUCGGga----CCGUGaCGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 108343 0.76 0.276274
Target:  5'- cUGCcgCGGGCCCgGGCGCUgGCGGCa- -3'
miRNA:   3'- -AUGuaGCUCGGGaCCGUGA-CGCUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.