miRNA display CGI


Results 41 - 60 of 549 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 3' -61.3 NC_005261.1 + 31299 0.74 0.260293
Target:  5'- aGGUGCgcgugucgcugGCgGCCCUGcaGCGCGCcgCGGCg -3'
miRNA:   3'- -UCAUG-----------CGgCGGGACa-CGCGCGa-GCCG- -5'
23583 3' -61.3 NC_005261.1 + 37499 0.74 0.248466
Target:  5'- --cGCGCCGCCgCgc-GCGCGCgCGGCg -3'
miRNA:   3'- ucaUGCGGCGG-GacaCGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 53524 0.74 0.248466
Target:  5'- --cGCGCCGCUUUGUgcucgcgugcccGCGCGC-CGGCu -3'
miRNA:   3'- ucaUGCGGCGGGACA------------CGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 45978 0.74 0.242721
Target:  5'- gAGUACcggGCCuUCCUGgccuccauccGCGCGCUCGGCg -3'
miRNA:   3'- -UCAUG---CGGcGGGACa---------CGCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 133843 0.74 0.260293
Target:  5'- ---cCGCCGCCCggccgcGUGCGC-UUCGGCg -3'
miRNA:   3'- ucauGCGGCGGGa-----CACGCGcGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 39333 0.73 0.298528
Target:  5'- --cGCGCCGCCgCggccaagcUGCGCGCggCGGCa -3'
miRNA:   3'- ucaUGCGGCGG-Gac------ACGCGCGa-GCCG- -5'
23583 3' -61.3 NC_005261.1 + 2375 0.73 0.266377
Target:  5'- --cGCGCCGCCgCaGcgGCGCGCUggCGGCg -3'
miRNA:   3'- ucaUGCGGCGG-GaCa-CGCGCGA--GCCG- -5'
23583 3' -61.3 NC_005261.1 + 15278 0.73 0.272576
Target:  5'- --gGCGCCGCCggG-GCGCGCggucgCGGCc -3'
miRNA:   3'- ucaUGCGGCGGgaCaCGCGCGa----GCCG- -5'
23583 3' -61.3 NC_005261.1 + 63088 0.73 0.266377
Target:  5'- --cGCGUCGCCagg-GgGCGCUCGGCg -3'
miRNA:   3'- ucaUGCGGCGGgacaCgCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 106892 0.73 0.266377
Target:  5'- --cGCGCCGCCgCaGcgGCGCGCUggCGGCg -3'
miRNA:   3'- ucaUGCGGCGG-GaCa-CGCGCGA--GCCG- -5'
23583 3' -61.3 NC_005261.1 + 102392 0.73 0.272576
Target:  5'- cGGUGCGCCGCCUUuucUGCGCcgaGCUCucggGGCc -3'
miRNA:   3'- -UCAUGCGGCGGGAc--ACGCG---CGAG----CCG- -5'
23583 3' -61.3 NC_005261.1 + 117903 0.73 0.272576
Target:  5'- --gGCGUCGCUC-GUGCGCGgCUCGGg -3'
miRNA:   3'- ucaUGCGGCGGGaCACGCGC-GAGCCg -5'
23583 3' -61.3 NC_005261.1 + 137809 0.73 0.278889
Target:  5'- --gGCGCCGCCCcugGUGCuCGCggGGCu -3'
miRNA:   3'- ucaUGCGGCGGGa--CACGcGCGagCCG- -5'
23583 3' -61.3 NC_005261.1 + 83531 0.73 0.291205
Target:  5'- --cGCGCCcuccaGCCCcaugGUGCGCGCgaagaacUCGGCg -3'
miRNA:   3'- ucaUGCGG-----CGGGa---CACGCGCG-------AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 77012 0.73 0.281447
Target:  5'- --cGCGCCGCCCUccucgccgacgccgaGgccGCGCGCgCGGCc -3'
miRNA:   3'- ucaUGCGGCGGGA---------------Ca--CGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 118119 0.73 0.272576
Target:  5'- -cUGCGCCGCCggcucGCGcCGCUCGGCc -3'
miRNA:   3'- ucAUGCGGCGGgaca-CGC-GCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 124266 0.73 0.278889
Target:  5'- --gGCGCCGCCC---GCGCGCccCGGCc -3'
miRNA:   3'- ucaUGCGGCGGGacaCGCGCGa-GCCG- -5'
23583 3' -61.3 NC_005261.1 + 55265 0.73 0.278889
Target:  5'- aGGUcuGCGCC-CCCUG-GCGCGCcggaGGCg -3'
miRNA:   3'- -UCA--UGCGGcGGGACaCGCGCGag--CCG- -5'
23583 3' -61.3 NC_005261.1 + 126 0.73 0.278889
Target:  5'- --gGCGCCGCCCcugGUGCuCGCggGGCu -3'
miRNA:   3'- ucaUGCGGCGGGa--CACGcGCGagCCG- -5'
23583 3' -61.3 NC_005261.1 + 117935 0.73 0.272576
Target:  5'- cGgcUGCgGCCC-GUGCGCGCUCGcuGCu -3'
miRNA:   3'- uCauGCGgCGGGaCACGCGCGAGC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.