miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 5' -50.8 NC_005261.1 + 32079 0.66 0.992889
Target:  5'- gGCGCUGggGcuCGGGGAGccGgACUUc -3'
miRNA:   3'- -CGCGACuuCauGCUCCUCuaCaUGGA- -5'
23583 5' -50.8 NC_005261.1 + 11474 0.74 0.778416
Target:  5'- gGCGCgGAGGgGCGGGGcGGggGUGCCg -3'
miRNA:   3'- -CGCGaCUUCaUGCUCC-UCuaCAUGGa -5'
23583 5' -50.8 NC_005261.1 + 55297 0.76 0.665631
Target:  5'- gGCGCUGAagagccGGUGCGGGGGGucaggggGUGCUg -3'
miRNA:   3'- -CGCGACU------UCAUGCUCCUCua-----CAUGGa -5'
23583 5' -50.8 NC_005261.1 + 111943 1.11 0.006271
Target:  5'- gGCGCUGAAGUACGAGGAGAUGUACCUg -3'
miRNA:   3'- -CGCGACUUCAUGCUCCUCUACAUGGA- -5'
23583 5' -50.8 NC_005261.1 + 94908 0.67 0.982363
Target:  5'- cGCGCUGGAG-GCGAGGaAGGaGcGCUUc -3'
miRNA:   3'- -CGCGACUUCaUGCUCC-UCUaCaUGGA- -5'
23583 5' -50.8 NC_005261.1 + 115054 0.67 0.977859
Target:  5'- gGCGaaGggGgGCGGGGuggGGAUGUGCUUc -3'
miRNA:   3'- -CGCgaCuuCaUGCUCC---UCUACAUGGA- -5'
23583 5' -50.8 NC_005261.1 + 34620 0.68 0.975312
Target:  5'- cGCGCUGGAGccccugauagGCGAGGAGGcccccgcguucgUGcgcaGCCUg -3'
miRNA:   3'- -CGCGACUUCa---------UGCUCCUCU------------ACa---UGGA- -5'
23583 5' -50.8 NC_005261.1 + 109677 0.68 0.975312
Target:  5'- gGUGCUGAGcggACGAGGGacGAUGgccgcGCCUa -3'
miRNA:   3'- -CGCGACUUca-UGCUCCU--CUACa----UGGA- -5'
23583 5' -50.8 NC_005261.1 + 78523 0.68 0.966397
Target:  5'- gGCGCgagcgGAGGcgGCGAGGGGAagggGaGCCg -3'
miRNA:   3'- -CGCGa----CUUCa-UGCUCCUCUa---CaUGGa -5'
23583 5' -50.8 NC_005261.1 + 14689 0.71 0.895782
Target:  5'- uCGCUGAuGGUgGCGAGGGGggGcGCCUu -3'
miRNA:   3'- cGCGACU-UCA-UGCUCCUCuaCaUGGA- -5'
23583 5' -50.8 NC_005261.1 + 76173 0.7 0.937337
Target:  5'- gGCGCUGcAGUACGAGcGGGGccugggcGUGCUg -3'
miRNA:   3'- -CGCGACuUCAUGCUC-CUCUa------CAUGGa -5'
23583 5' -50.8 NC_005261.1 + 115322 0.68 0.966397
Target:  5'- uGCGCgaucggGggGUACcGGGAcGUGUACUUc -3'
miRNA:   3'- -CGCGa-----CuuCAUGcUCCUcUACAUGGA- -5'
23583 5' -50.8 NC_005261.1 + 13280 0.66 0.989264
Target:  5'- aCGCUGuuGUugGCGGGGcgcAGGUGUGCg- -3'
miRNA:   3'- cGCGACuuCA--UGCUCC---UCUACAUGga -5'
23583 5' -50.8 NC_005261.1 + 14948 0.7 0.937337
Target:  5'- gGCGCUGGAa-GCGAGcGGgcGUGCCUg -3'
miRNA:   3'- -CGCGACUUcaUGCUCcUCuaCAUGGA- -5'
23583 5' -50.8 NC_005261.1 + 132667 0.67 0.98614
Target:  5'- cGCGUguGGGUGCGAGGAcaaGAUGgGCUUc -3'
miRNA:   3'- -CGCGacUUCAUGCUCCU---CUACaUGGA- -5'
23583 5' -50.8 NC_005261.1 + 27244 0.68 0.972558
Target:  5'- gGCGcCUGggGUG-GGGcGGGGUGUGCg- -3'
miRNA:   3'- -CGC-GACuuCAUgCUC-CUCUACAUGga -5'
23583 5' -50.8 NC_005261.1 + 58295 0.7 0.915137
Target:  5'- cGCGCcGggGggcGCGGGGAGggGgcgGCCc -3'
miRNA:   3'- -CGCGaCuuCa--UGCUCCUCuaCa--UGGa -5'
23583 5' -50.8 NC_005261.1 + 79088 0.74 0.748783
Target:  5'- aGCGCcuucaUGggGUugcugcggagGCG-GGAGAUGUACCg -3'
miRNA:   3'- -CGCG-----ACuuCA----------UGCuCCUCUACAUGGa -5'
23583 5' -50.8 NC_005261.1 + 98819 0.67 0.982363
Target:  5'- gGCGUgccgGAAG-ACGGGGGGGUGgGCg- -3'
miRNA:   3'- -CGCGa---CUUCaUGCUCCUCUACaUGga -5'
23583 5' -50.8 NC_005261.1 + 34491 0.67 0.977859
Target:  5'- gGUGCUGGAGUGgguCGAGGGcgcucuGGUGggcACCUu -3'
miRNA:   3'- -CGCGACUUCAU---GCUCCU------CUACa--UGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.