miRNA display CGI


Results 1 - 20 of 557 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 3' -60 NC_005261.1 + 84495 0.75 0.281637
Target:  5'- gGCACGuGCUCGCCcguGCGGGcgCGCC-GCa -3'
miRNA:   3'- gCGUGC-UGAGCGG---CGCCCa-GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 44445 0.76 0.228526
Target:  5'- gGCGCGGCgUC-CCGgGGG-CACCUGCu -3'
miRNA:   3'- gCGUGCUG-AGcGGCgCCCaGUGGACG- -5'
23584 3' -60 NC_005261.1 + 66970 0.76 0.233982
Target:  5'- gCGCGCGugcuGCUCGgCGCGGGgcUCGgCUGCg -3'
miRNA:   3'- -GCGUGC----UGAGCgGCGCCC--AGUgGACG- -5'
23584 3' -60 NC_005261.1 + 29478 0.76 0.245222
Target:  5'- gGCGCGGCgCGCCGCGGa-CGCCgcgGCg -3'
miRNA:   3'- gCGUGCUGaGCGGCGCCcaGUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 117881 0.76 0.251008
Target:  5'- aGUACGGCUCgcggcaGCCGCGGGcgUCGCUcgUGCg -3'
miRNA:   3'- gCGUGCUGAG------CGGCGCCC--AGUGG--ACG- -5'
23584 3' -60 NC_005261.1 + 133100 0.76 0.251008
Target:  5'- gCGCGCGAg-CGCCgGCGGGcCGCCcGCg -3'
miRNA:   3'- -GCGUGCUgaGCGG-CGCCCaGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 29726 0.75 0.262917
Target:  5'- uGCGCGGCgUgGCCGCGGGUagcgucgcggcgCGCgUGCg -3'
miRNA:   3'- gCGUGCUG-AgCGGCGCCCA------------GUGgACG- -5'
23584 3' -60 NC_005261.1 + 41632 0.75 0.265354
Target:  5'- aCGCGCGACgugcugcggcagagCGCCGCcgGGGUCACg-GCg -3'
miRNA:   3'- -GCGUGCUGa-------------GCGGCG--CCCAGUGgaCG- -5'
23584 3' -60 NC_005261.1 + 68965 0.75 0.269042
Target:  5'- gCGgGCGGCUCGCCG-GGGUCGgCgcggGCc -3'
miRNA:   3'- -GCgUGCUGAGCGGCgCCCAGUgGa---CG- -5'
23584 3' -60 NC_005261.1 + 38762 0.76 0.228526
Target:  5'- cCGCAgCGGCcagcgcCGCCGCGGGUCgGCCcGCg -3'
miRNA:   3'- -GCGU-GCUGa-----GCGGCGCCCAG-UGGaCG- -5'
23584 3' -60 NC_005261.1 + 44744 0.76 0.223178
Target:  5'- uCGCGCGcUUCGCCGCGGGcgacgcgCGCCccgGCa -3'
miRNA:   3'- -GCGUGCuGAGCGGCGCCCa------GUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 88932 0.76 0.223178
Target:  5'- uGCGCGGCgcucacCGCCGCGGG-CuuCUGCg -3'
miRNA:   3'- gCGUGCUGa-----GCGGCGCCCaGugGACG- -5'
23584 3' -60 NC_005261.1 + 106438 0.83 0.082229
Target:  5'- gCGCGCGGCgcacugCGCCGCGGGcagCACCgcgGCg -3'
miRNA:   3'- -GCGUGCUGa-----GCGGCGCCCa--GUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 16851 0.83 0.086586
Target:  5'- gGCGCcGC-CGCCGCGGGgCGCCUGCa -3'
miRNA:   3'- gCGUGcUGaGCGGCGCCCaGUGGACG- -5'
23584 3' -60 NC_005261.1 + 121504 0.8 0.140354
Target:  5'- cCGCGCGGCUCGCCGaGGGccagUACCgGCg -3'
miRNA:   3'- -GCGUGCUGAGCGGCgCCCa---GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 13972 0.78 0.162905
Target:  5'- gCGCGCgGGCggCGCCGCGcGG-CGCCUGCc -3'
miRNA:   3'- -GCGUG-CUGa-GCGGCGC-CCaGUGGACG- -5'
23584 3' -60 NC_005261.1 + 104449 0.78 0.184134
Target:  5'- cCGCGCGgggcccagcGCUCGCCGCGGGcccCGCgaGCg -3'
miRNA:   3'- -GCGUGC---------UGAGCGGCGCCCa--GUGgaCG- -5'
23584 3' -60 NC_005261.1 + 96006 0.77 0.188663
Target:  5'- gCGCGCGgcggaGCUCGCgGCGGGgCGCCcGCg -3'
miRNA:   3'- -GCGUGC-----UGAGCGgCGCCCaGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 108995 0.77 0.19329
Target:  5'- uCGCGCGGC--GCCGCGGcGUaGCCUGCg -3'
miRNA:   3'- -GCGUGCUGagCGGCGCC-CAgUGGACG- -5'
23584 3' -60 NC_005261.1 + 70695 0.77 0.217937
Target:  5'- gCGaCGCGACguucgcCGCCGCGGG-CGCCgcgGCg -3'
miRNA:   3'- -GC-GUGCUGa-----GCGGCGCCCaGUGGa--CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.