Results 1 - 20 of 557 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23584 | 3' | -60 | NC_005261.1 | + | 106438 | 0.83 | 0.082229 |
Target: 5'- gCGCGCGGCgcacugCGCCGCGGGcagCACCgcgGCg -3' miRNA: 3'- -GCGUGCUGa-----GCGGCGCCCa--GUGGa--CG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 68965 | 0.75 | 0.269042 |
Target: 5'- gCGgGCGGCUCGCCG-GGGUCGgCgcggGCc -3' miRNA: 3'- -GCgUGCUGAGCGGCgCCCAGUgGa---CG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 41632 | 0.75 | 0.265354 |
Target: 5'- aCGCGCGACgugcugcggcagagCGCCGCcgGGGUCACg-GCg -3' miRNA: 3'- -GCGUGCUGa-------------GCGGCG--CCCAGUGgaCG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 29726 | 0.75 | 0.262917 |
Target: 5'- uGCGCGGCgUgGCCGCGGGUagcgucgcggcgCGCgUGCg -3' miRNA: 3'- gCGUGCUG-AgCGGCGCCCA------------GUGgACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 133100 | 0.76 | 0.251008 |
Target: 5'- gCGCGCGAg-CGCCgGCGGGcCGCCcGCg -3' miRNA: 3'- -GCGUGCUgaGCGG-CGCCCaGUGGaCG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 117881 | 0.76 | 0.251008 |
Target: 5'- aGUACGGCUCgcggcaGCCGCGGGcgUCGCUcgUGCg -3' miRNA: 3'- gCGUGCUGAG------CGGCGCCC--AGUGG--ACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 29478 | 0.76 | 0.245222 |
Target: 5'- gGCGCGGCgCGCCGCGGa-CGCCgcgGCg -3' miRNA: 3'- gCGUGCUGaGCGGCGCCcaGUGGa--CG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 66970 | 0.76 | 0.233982 |
Target: 5'- gCGCGCGugcuGCUCGgCGCGGGgcUCGgCUGCg -3' miRNA: 3'- -GCGUGC----UGAGCgGCGCCC--AGUgGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 44445 | 0.76 | 0.228526 |
Target: 5'- gGCGCGGCgUC-CCGgGGG-CACCUGCu -3' miRNA: 3'- gCGUGCUG-AGcGGCgCCCaGUGGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 38762 | 0.76 | 0.228526 |
Target: 5'- cCGCAgCGGCcagcgcCGCCGCGGGUCgGCCcGCg -3' miRNA: 3'- -GCGU-GCUGa-----GCGGCGCCCAG-UGGaCG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 44744 | 0.76 | 0.223178 |
Target: 5'- uCGCGCGcUUCGCCGCGGGcgacgcgCGCCccgGCa -3' miRNA: 3'- -GCGUGCuGAGCGGCGCCCa------GUGGa--CG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 88932 | 0.76 | 0.223178 |
Target: 5'- uGCGCGGCgcucacCGCCGCGGG-CuuCUGCg -3' miRNA: 3'- gCGUGCUGa-----GCGGCGCCCaGugGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 70695 | 0.77 | 0.217937 |
Target: 5'- gCGaCGCGACguucgcCGCCGCGGG-CGCCgcgGCg -3' miRNA: 3'- -GC-GUGCUGa-----GCGGCGCCCaGUGGa--CG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 108995 | 0.77 | 0.19329 |
Target: 5'- uCGCGCGGC--GCCGCGGcGUaGCCUGCg -3' miRNA: 3'- -GCGUGCUGagCGGCGCC-CAgUGGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 96006 | 0.77 | 0.188663 |
Target: 5'- gCGCGCGgcggaGCUCGCgGCGGGgCGCCcGCg -3' miRNA: 3'- -GCGUGC-----UGAGCGgCGCCCaGUGGaCG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 104449 | 0.78 | 0.184134 |
Target: 5'- cCGCGCGgggcccagcGCUCGCCGCGGGcccCGCgaGCg -3' miRNA: 3'- -GCGUGC---------UGAGCGGCGCCCa--GUGgaCG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 13972 | 0.78 | 0.162905 |
Target: 5'- gCGCGCgGGCggCGCCGCGcGG-CGCCUGCc -3' miRNA: 3'- -GCGUG-CUGa-GCGGCGC-CCaGUGGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 121504 | 0.8 | 0.140354 |
Target: 5'- cCGCGCGGCUCGCCGaGGGccagUACCgGCg -3' miRNA: 3'- -GCGUGCUGAGCGGCgCCCa---GUGGaCG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 16851 | 0.83 | 0.086586 |
Target: 5'- gGCGCcGC-CGCCGCGGGgCGCCUGCa -3' miRNA: 3'- gCGUGcUGaGCGGCGCCCaGUGGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 75194 | 0.84 | 0.070381 |
Target: 5'- uGCGCGACcgccUCGCCGCGGG-CGCCgGCg -3' miRNA: 3'- gCGUGCUG----AGCGGCGCCCaGUGGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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