miRNA display CGI


Results 1 - 20 of 557 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 3' -60 NC_005261.1 + 14292 0.66 0.73018
Target:  5'- uGCGCuGGCU-GUaucuaGCGGGcgcgCACCUGCu -3'
miRNA:   3'- gCGUG-CUGAgCGg----CGCCCa---GUGGACG- -5'
23584 3' -60 NC_005261.1 + 95738 0.66 0.739678
Target:  5'- gGCGCGACgcgcgUCGCCGCGcaaaacGUCuACCUaaaGCu -3'
miRNA:   3'- gCGUGCUG-----AGCGGCGCc-----CAG-UGGA---CG- -5'
23584 3' -60 NC_005261.1 + 106576 0.66 0.724443
Target:  5'- cCGCAggcagagguacuCGACcgCGCCGCGGaaggccaggucccgcGUCGCgaGCa -3'
miRNA:   3'- -GCGU------------GCUGa-GCGGCGCC---------------CAGUGgaCG- -5'
23584 3' -60 NC_005261.1 + 37534 0.66 0.720603
Target:  5'- uCGgGCGGCgcgCGCCGCGgccgcGGUgCACUcGCg -3'
miRNA:   3'- -GCgUGCUGa--GCGGCGC-----CCA-GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 5624 0.66 0.739678
Target:  5'- gCGCccccugGCGGCUCGCCGggcCGGG-CGuCCgcggGCg -3'
miRNA:   3'- -GCG------UGCUGAGCGGC---GCCCaGU-GGa---CG- -5'
23584 3' -60 NC_005261.1 + 50536 0.66 0.739678
Target:  5'- uCGCACuGCUUGCgGCGcGGagcugcgacUCACCgcugGCg -3'
miRNA:   3'- -GCGUGcUGAGCGgCGC-CC---------AGUGGa---CG- -5'
23584 3' -60 NC_005261.1 + 28975 0.66 0.739678
Target:  5'- uCGCugGACuUCGUgGCcccgcacuGGGcCGCgCUGCa -3'
miRNA:   3'- -GCGugCUG-AGCGgCG--------CCCaGUG-GACG- -5'
23584 3' -60 NC_005261.1 + 128088 0.66 0.739678
Target:  5'- gGCAgGGCUgGCCGUGGcUCAUg-GCg -3'
miRNA:   3'- gCGUgCUGAgCGGCGCCcAGUGgaCG- -5'
23584 3' -60 NC_005261.1 + 88703 0.66 0.73018
Target:  5'- cCGCggacgGCGGCUgGcCCGCGaccuuuucggaGGUCACCgGCc -3'
miRNA:   3'- -GCG-----UGCUGAgC-GGCGC-----------CCAGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 73621 0.66 0.73018
Target:  5'- uGC-CGGCcuUCGCgCGCGGcGgCugCUGCa -3'
miRNA:   3'- gCGuGCUG--AGCG-GCGCC-CaGugGACG- -5'
23584 3' -60 NC_005261.1 + 122398 0.66 0.739678
Target:  5'- aGCGCG-CUCGCgaUGCGGuGcCugUUGCu -3'
miRNA:   3'- gCGUGCuGAGCG--GCGCC-CaGugGACG- -5'
23584 3' -60 NC_005261.1 + 128426 0.66 0.719641
Target:  5'- uCGCugGGCUgGgCCagcugggGUGGGcUCACCUcGCg -3'
miRNA:   3'- -GCGugCUGAgC-GG-------CGCCC-AGUGGA-CG- -5'
23584 3' -60 NC_005261.1 + 120315 0.66 0.739678
Target:  5'- gGCcCGACUCGCUGCuaaucGGcgccGUCGCCaaggGCa -3'
miRNA:   3'- gCGuGCUGAGCGGCG-----CC----CAGUGGa---CG- -5'
23584 3' -60 NC_005261.1 + 78915 0.66 0.720603
Target:  5'- gCGCACG-CUgGCCgagugguuugacGCGGGgcacugCGCgCUGCu -3'
miRNA:   3'- -GCGUGCuGAgCGG------------CGCCCa-----GUG-GACG- -5'
23584 3' -60 NC_005261.1 + 44308 0.66 0.73018
Target:  5'- gCGgACGGCgcaaGcCCGCGGG-CGCC-GCg -3'
miRNA:   3'- -GCgUGCUGag--C-GGCGCCCaGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 1769 0.66 0.738732
Target:  5'- gCGCGCGAgUCuggggcuGCCGCGuGcC-CCUGCg -3'
miRNA:   3'- -GCGUGCUgAG-------CGGCGCcCaGuGGACG- -5'
23584 3' -60 NC_005261.1 + 46082 0.66 0.739678
Target:  5'- gCGCGCG-CUCGCCGa-GGUC-CUgGCc -3'
miRNA:   3'- -GCGUGCuGAGCGGCgcCCAGuGGaCG- -5'
23584 3' -60 NC_005261.1 + 32938 0.66 0.739678
Target:  5'- cCGCGCucGCgCGCC-CGGGcUCGCCgGCg -3'
miRNA:   3'- -GCGUGc-UGaGCGGcGCCC-AGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 37721 0.66 0.719641
Target:  5'- cCGCGCGGCUaccuggaCGCCGaCGGcaCGCC-GCu -3'
miRNA:   3'- -GCGUGCUGA-------GCGGC-GCCcaGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 122847 0.66 0.720603
Target:  5'- gGCAuCGACggcggCGCCGaGGG-CGCCgaGCg -3'
miRNA:   3'- gCGU-GCUGa----GCGGCgCCCaGUGGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.