Results 21 - 40 of 557 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23584 | 3' | -60 | NC_005261.1 | + | 28404 | 0.66 | 0.7584 |
Target: 5'- aCGCcagauucgGCGGC-CGCCGCGGcGgaagcggCGCCgGCc -3' miRNA: 3'- -GCG--------UGCUGaGCGGCGCC-Ca------GUGGaCG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 122847 | 0.66 | 0.720603 |
Target: 5'- gGCAuCGACggcggCGCCGaGGG-CGCCgaGCg -3' miRNA: 3'- gCGU-GCUGa----GCGGCgCCCaGUGGa-CG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 37721 | 0.66 | 0.719641 |
Target: 5'- cCGCGCGGCUaccuggaCGCCGaCGGcaCGCC-GCu -3' miRNA: 3'- -GCGUGCUGA-------GCGGC-GCCcaGUGGaCG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 56737 | 0.66 | 0.749087 |
Target: 5'- gCGCGCGccgcGCUaGCCGCGGc---CCUGCu -3' miRNA: 3'- -GCGUGC----UGAgCGGCGCCcaguGGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 106576 | 0.66 | 0.724443 |
Target: 5'- cCGCAggcagagguacuCGACcgCGCCGCGGaaggccaggucccgcGUCGCgaGCa -3' miRNA: 3'- -GCGU------------GCUGa-GCGGCGCC---------------CAGUGgaCG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 73621 | 0.66 | 0.73018 |
Target: 5'- uGC-CGGCcuUCGCgCGCGGcGgCugCUGCa -3' miRNA: 3'- gCGuGCUG--AGCG-GCGCC-CaGugGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 28975 | 0.66 | 0.739678 |
Target: 5'- uCGCugGACuUCGUgGCcccgcacuGGGcCGCgCUGCa -3' miRNA: 3'- -GCGugCUG-AGCGgCG--------CCCaGUG-GACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 19182 | 0.66 | 0.749087 |
Target: 5'- aCGCGCGGC-CGCgGgCGcGUUACCgucgGCg -3' miRNA: 3'- -GCGUGCUGaGCGgC-GCcCAGUGGa---CG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 120315 | 0.66 | 0.739678 |
Target: 5'- gGCcCGACUCGCUGCuaaucGGcgccGUCGCCaaggGCa -3' miRNA: 3'- gCGuGCUGAGCGGCG-----CC----CAGUGGa---CG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 31657 | 0.66 | 0.7584 |
Target: 5'- cCGCGCGGCg-GCCcCGGGgccggcgcgCGCCgGCc -3' miRNA: 3'- -GCGUGCUGagCGGcGCCCa--------GUGGaCG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 5205 | 0.66 | 0.749087 |
Target: 5'- uGCGCGGUggcgCGcCCGCGGGUgGCgCaGCg -3' miRNA: 3'- gCGUGCUGa---GC-GGCGCCCAgUG-GaCG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 47695 | 0.66 | 0.7584 |
Target: 5'- gGCGCGGCggcggggaugCGCgCGCGGaUgGCCUuGCg -3' miRNA: 3'- gCGUGCUGa---------GCG-GCGCCcAgUGGA-CG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 95738 | 0.66 | 0.739678 |
Target: 5'- gGCGCGACgcgcgUCGCCGCGcaaaacGUCuACCUaaaGCu -3' miRNA: 3'- gCGUGCUG-----AGCGGCGCc-----CAG-UGGA---CG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 14292 | 0.66 | 0.73018 |
Target: 5'- uGCGCuGGCU-GUaucuaGCGGGcgcgCACCUGCu -3' miRNA: 3'- gCGUG-CUGAgCGg----CGCCCa---GUGGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 39196 | 0.66 | 0.7584 |
Target: 5'- uCGCGCGGg-UGCUGUGGGcgcgCGCCgccGCg -3' miRNA: 3'- -GCGUGCUgaGCGGCGCCCa---GUGGa--CG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 46082 | 0.66 | 0.739678 |
Target: 5'- gCGCGCG-CUCGCCGa-GGUC-CUgGCc -3' miRNA: 3'- -GCGUGCuGAGCGGCgcCCAGuGGaCG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 11202 | 0.66 | 0.7584 |
Target: 5'- gCGUucgACGACUCcCUGCucGGGccgcCGCCUGCg -3' miRNA: 3'- -GCG---UGCUGAGcGGCG--CCCa---GUGGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 30567 | 0.66 | 0.7584 |
Target: 5'- aCGCcCGGCgggGCCGCGGaGUUugC-GCg -3' miRNA: 3'- -GCGuGCUGag-CGGCGCC-CAGugGaCG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 44308 | 0.66 | 0.73018 |
Target: 5'- gCGgACGGCgcaaGcCCGCGGG-CGCC-GCg -3' miRNA: 3'- -GCgUGCUGag--C-GGCGCCCaGUGGaCG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 5624 | 0.66 | 0.739678 |
Target: 5'- gCGCccccugGCGGCUCGCCGggcCGGG-CGuCCgcggGCg -3' miRNA: 3'- -GCG------UGCUGAGCGGC---GCCCaGU-GGa---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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