miRNA display CGI


Results 41 - 60 of 557 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 3' -60 NC_005261.1 + 5624 0.66 0.739678
Target:  5'- gCGCccccugGCGGCUCGCCGggcCGGG-CGuCCgcggGCg -3'
miRNA:   3'- -GCG------UGCUGAGCGGC---GCCCaGU-GGa---CG- -5'
23584 3' -60 NC_005261.1 + 6645 0.66 0.767608
Target:  5'- gCGCGCGuaggccucgGC-CGUCGCGGGgggcaGCCggGCg -3'
miRNA:   3'- -GCGUGC---------UGaGCGGCGCCCag---UGGa-CG- -5'
23584 3' -60 NC_005261.1 + 92594 0.66 0.767608
Target:  5'- gGCACuGCUcCGgCGCGGGccCGCC-GCg -3'
miRNA:   3'- gCGUGcUGA-GCgGCGCCCa-GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 31657 0.66 0.7584
Target:  5'- cCGCGCGGCg-GCCcCGGGgccggcgcgCGCCgGCc -3'
miRNA:   3'- -GCGUGCUGagCGGcGCCCa--------GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 34167 0.66 0.7584
Target:  5'- aGCugGACgCGCuCGCGGccGagGCgCUGCg -3'
miRNA:   3'- gCGugCUGaGCG-GCGCC--CagUG-GACG- -5'
23584 3' -60 NC_005261.1 + 46082 0.66 0.739678
Target:  5'- gCGCGCG-CUCGCCGa-GGUC-CUgGCc -3'
miRNA:   3'- -GCGUGCuGAGCGGCgcCCAGuGGaCG- -5'
23584 3' -60 NC_005261.1 + 78915 0.66 0.720603
Target:  5'- gCGCACG-CUgGCCgagugguuugacGCGGGgcacugCGCgCUGCu -3'
miRNA:   3'- -GCGUGCuGAgCGG------------CGCCCa-----GUG-GACG- -5'
23584 3' -60 NC_005261.1 + 32938 0.66 0.739678
Target:  5'- cCGCGCucGCgCGCC-CGGGcUCGCCgGCg -3'
miRNA:   3'- -GCGUGc-UGaGCGGcGCCC-AGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 37721 0.66 0.719641
Target:  5'- cCGCGCGGCUaccuggaCGCCGaCGGcaCGCC-GCu -3'
miRNA:   3'- -GCGUGCUGA-------GCGGC-GCCcaGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 32254 0.66 0.767608
Target:  5'- gCGgGCGGCgucgaCGCCGCgcuGGG-CGCCgagGCc -3'
miRNA:   3'- -GCgUGCUGa----GCGGCG---CCCaGUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 73621 0.66 0.73018
Target:  5'- uGC-CGGCcuUCGCgCGCGGcGgCugCUGCa -3'
miRNA:   3'- gCGuGCUG--AGCG-GCGCC-CaGugGACG- -5'
23584 3' -60 NC_005261.1 + 102549 0.66 0.749087
Target:  5'- -cCGgGGCUCGCCgGCGGGggugCgGCCgGCa -3'
miRNA:   3'- gcGUgCUGAGCGG-CGCCCa---G-UGGaCG- -5'
23584 3' -60 NC_005261.1 + 28975 0.66 0.739678
Target:  5'- uCGCugGACuUCGUgGCcccgcacuGGGcCGCgCUGCa -3'
miRNA:   3'- -GCGugCUG-AGCGgCG--------CCCaGUG-GACG- -5'
23584 3' -60 NC_005261.1 + 104832 0.66 0.767608
Target:  5'- uCGCGgGGCcgCGCCacgcggaccgcGCGGGUCACgcacGCg -3'
miRNA:   3'- -GCGUgCUGa-GCGG-----------CGCCCAGUGga--CG- -5'
23584 3' -60 NC_005261.1 + 98901 0.66 0.767608
Target:  5'- aCGCgcgugaacaGCGGgUCGgCG-GGGUCGgCUGCg -3'
miRNA:   3'- -GCG---------UGCUgAGCgGCgCCCAGUgGACG- -5'
23584 3' -60 NC_005261.1 + 109632 0.66 0.767608
Target:  5'- cCGC-CaGCUCGgCGCGGGcggccCGCCgGCg -3'
miRNA:   3'- -GCGuGcUGAGCgGCGCCCa----GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 128426 0.66 0.719641
Target:  5'- uCGCugGGCUgGgCCagcugggGUGGGcUCACCUcGCg -3'
miRNA:   3'- -GCGugCUGAgC-GG-------CGCCC-AGUGGA-CG- -5'
23584 3' -60 NC_005261.1 + 120315 0.66 0.739678
Target:  5'- gGCcCGACUCGCUGCuaaucGGcgccGUCGCCaaggGCa -3'
miRNA:   3'- gCGuGCUGAGCGGCG-----CC----CAGUGGa---CG- -5'
23584 3' -60 NC_005261.1 + 47695 0.66 0.7584
Target:  5'- gGCGCGGCggcggggaugCGCgCGCGGaUgGCCUuGCg -3'
miRNA:   3'- gCGUGCUGa---------GCG-GCGCCcAgUGGA-CG- -5'
23584 3' -60 NC_005261.1 + 22746 0.66 0.767608
Target:  5'- gGCGCG-C-CGCCGCGGccgaGCCcGCg -3'
miRNA:   3'- gCGUGCuGaGCGGCGCCcag-UGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.