miRNA display CGI


Results 41 - 60 of 557 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 3' -60 NC_005261.1 + 12344 0.72 0.415884
Target:  5'- gGCGCGGCcgcCGCCGCGGcGgcaACCgGCg -3'
miRNA:   3'- gCGUGCUGa--GCGGCGCC-Cag-UGGaCG- -5'
23584 3' -60 NC_005261.1 + 12663 0.68 0.602427
Target:  5'- gGCGCGACaUCGUCguccucgaGCGGGUC-CCUa- -3'
miRNA:   3'- gCGUGCUG-AGCGG--------CGCCCAGuGGAcg -5'
23584 3' -60 NC_005261.1 + 12709 0.66 0.749087
Target:  5'- aGCccgaGCGGCUCggGCgCGCGGGccCGCCgGCc -3'
miRNA:   3'- gCG----UGCUGAG--CG-GCGCCCa-GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 13117 0.7 0.524444
Target:  5'- gGCGuCGGCg-GCCGCGGGgCGCgUGUg -3'
miRNA:   3'- gCGU-GCUGagCGGCGCCCaGUGgACG- -5'
23584 3' -60 NC_005261.1 + 13266 0.67 0.66193
Target:  5'- cCGCGCGAUUUGagUGCGGGcuccagggCGCCgGCa -3'
miRNA:   3'- -GCGUGCUGAGCg-GCGCCCa-------GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 13479 0.66 0.739678
Target:  5'- uGCACGuCUCGUagaUGCGGacgagcgcgcaGUCGCCgGCc -3'
miRNA:   3'- gCGUGCuGAGCG---GCGCC-----------CAGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 13651 0.67 0.670824
Target:  5'- gCGCGCGccgugccGC-CGCCGCGGGgggggCGCgggGCg -3'
miRNA:   3'- -GCGUGC-------UGaGCGGCGCCCa----GUGga-CG- -5'
23584 3' -60 NC_005261.1 + 13816 0.67 0.690497
Target:  5'- gGC-CGGCUCGacCCGCagcgucaGGGUCGaCUGCg -3'
miRNA:   3'- gCGuGCUGAGC--GGCG-------CCCAGUgGACG- -5'
23584 3' -60 NC_005261.1 + 13972 0.78 0.162905
Target:  5'- gCGCGCgGGCggCGCCGCGcGG-CGCCUGCc -3'
miRNA:   3'- -GCGUG-CUGa-GCGGCGC-CCaGUGGACG- -5'
23584 3' -60 NC_005261.1 + 14173 0.68 0.632179
Target:  5'- gCGCGCGuCUCGgggCGCGGGUCAg--GCc -3'
miRNA:   3'- -GCGUGCuGAGCg--GCGCCCAGUggaCG- -5'
23584 3' -60 NC_005261.1 + 14292 0.66 0.73018
Target:  5'- uGCGCuGGCU-GUaucuaGCGGGcgcgCACCUGCu -3'
miRNA:   3'- gCGUG-CUGAgCGg----CGCCCa---GUGGACG- -5'
23584 3' -60 NC_005261.1 + 14423 0.69 0.596493
Target:  5'- gCGCGCugucucacggaacucGGCUCGCuCGCGGGgCGCgCgGCg -3'
miRNA:   3'- -GCGUG---------------CUGAGCG-GCGCCCaGUG-GaCG- -5'
23584 3' -60 NC_005261.1 + 14836 0.67 0.691476
Target:  5'- gGC-CGGCaaGCgGCGGGUCAUggagCUGUa -3'
miRNA:   3'- gCGuGCUGagCGgCGCCCAGUG----GACG- -5'
23584 3' -60 NC_005261.1 + 15434 0.68 0.631187
Target:  5'- gCGCGCGGCUcucuaaggaCGCCgucuggcGCGcGGUCAUCgGCu -3'
miRNA:   3'- -GCGUGCUGA---------GCGG-------CGC-CCAGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 15489 0.72 0.399147
Target:  5'- aCGCGCcGCUCGCUGCGGGcggggcgugugUCgGCgUGCa -3'
miRNA:   3'- -GCGUGcUGAGCGGCGCCC-----------AG-UGgACG- -5'
23584 3' -60 NC_005261.1 + 15911 0.71 0.468556
Target:  5'- aGCGCcaccuGAC-CGCCGgccCGGGcgUCGCCUGCg -3'
miRNA:   3'- gCGUG-----CUGaGCGGC---GCCC--AGUGGACG- -5'
23584 3' -60 NC_005261.1 + 16242 0.67 0.701243
Target:  5'- gCGguCGACguccgCGCCG-GGGcCGCCgggGCc -3'
miRNA:   3'- -GCguGCUGa----GCGGCgCCCaGUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 16276 0.7 0.505504
Target:  5'- gGCuuCGGCUCGCC-CGGGggggCGCCgucggGCc -3'
miRNA:   3'- gCGu-GCUGAGCGGcGCCCa---GUGGa----CG- -5'
23584 3' -60 NC_005261.1 + 16311 0.71 0.476752
Target:  5'- aGCgGCGGCcgggcccucccccUCGCCGCcGGUCuCCUGCc -3'
miRNA:   3'- gCG-UGCUG-------------AGCGGCGcCCAGuGGACG- -5'
23584 3' -60 NC_005261.1 + 16372 0.69 0.563075
Target:  5'- gGCuCGGCgggaGCCGCGGG-CugCUGg -3'
miRNA:   3'- gCGuGCUGag--CGGCGCCCaGugGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.