miRNA display CGI


Results 21 - 40 of 557 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 3' -60 NC_005261.1 + 5870 0.72 0.407461
Target:  5'- aGCGCGGCgagcgCGCCGCGGcggaAgCUGCg -3'
miRNA:   3'- gCGUGCUGa----GCGGCGCCcag-UgGACG- -5'
23584 3' -60 NC_005261.1 + 6298 0.67 0.691476
Target:  5'- uGCGCGGC-CGUCG-GGGcUCGuuUGCa -3'
miRNA:   3'- gCGUGCUGaGCGGCgCCC-AGUggACG- -5'
23584 3' -60 NC_005261.1 + 6588 0.66 0.755617
Target:  5'- gCGCcCGGggggcccgucggucCUCGCgGCGGG-CGCCagGCg -3'
miRNA:   3'- -GCGuGCU--------------GAGCGgCGCCCaGUGGa-CG- -5'
23584 3' -60 NC_005261.1 + 6645 0.66 0.767608
Target:  5'- gCGCGCGuaggccucgGC-CGUCGCGGGgggcaGCCggGCg -3'
miRNA:   3'- -GCGUGC---------UGaGCGGCGCCCag---UGGa-CG- -5'
23584 3' -60 NC_005261.1 + 6762 0.69 0.553336
Target:  5'- gGCGCG-CUCGCggagGCGGGaggCGCCcGCg -3'
miRNA:   3'- gCGUGCuGAGCGg---CGCCCa--GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 7040 0.72 0.399147
Target:  5'- gGCgGCGACcgCGCCGCGGGcguaGCCgcUGCg -3'
miRNA:   3'- gCG-UGCUGa-GCGGCGCCCag--UGG--ACG- -5'
23584 3' -60 NC_005261.1 + 7172 0.7 0.504565
Target:  5'- cCGCACGGCcugcaggUCGUaggugGCGGcGUCGCCgGCg -3'
miRNA:   3'- -GCGUGCUG-------AGCGg----CGCC-CAGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 7658 0.7 0.514938
Target:  5'- cCGCGCGGCggcgcuucCGCCcgGCGGGcCGCCcaGCa -3'
miRNA:   3'- -GCGUGCUGa-------GCGG--CGCCCaGUGGa-CG- -5'
23584 3' -60 NC_005261.1 + 8114 0.68 0.622252
Target:  5'- gCGCgGCGGCUCGCCaagGCGcaGUCGCUgGCg -3'
miRNA:   3'- -GCG-UGCUGAGCGG---CGCc-CAGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 8915 0.67 0.701243
Target:  5'- gCGaCGCGGCgccagCGCaggCGCGGGgCGCCggggGCg -3'
miRNA:   3'- -GC-GUGCUGa----GCG---GCGCCCaGUGGa---CG- -5'
23584 3' -60 NC_005261.1 + 9427 0.69 0.553336
Target:  5'- aGCGCGAgcCcCGCCGCGGG-C-CCggGCg -3'
miRNA:   3'- gCGUGCU--GaGCGGCGCCCaGuGGa-CG- -5'
23584 3' -60 NC_005261.1 + 10243 0.69 0.582684
Target:  5'- cCGCGC-ACUCGCCGCcgcGGGccuggCGCCuucUGCc -3'
miRNA:   3'- -GCGUGcUGAGCGGCG---CCCa----GUGG---ACG- -5'
23584 3' -60 NC_005261.1 + 10506 0.73 0.366997
Target:  5'- gCGCGCGGCcgcCGCUGCGGGcC-CCgcgGCg -3'
miRNA:   3'- -GCGUGCUGa--GCGGCGCCCaGuGGa--CG- -5'
23584 3' -60 NC_005261.1 + 11108 0.67 0.681663
Target:  5'- gGCG-GGCgcgCGCauaaaaauCGCGGGUCACC-GCg -3'
miRNA:   3'- gCGUgCUGa--GCG--------GCGCCCAGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 11202 0.66 0.7584
Target:  5'- gCGUucgACGACUCcCUGCucGGGccgcCGCCUGCg -3'
miRNA:   3'- -GCG---UGCUGAGcGGCG--CCCa---GUGGACG- -5'
23584 3' -60 NC_005261.1 + 11709 0.69 0.553336
Target:  5'- gGCGCGGCg-GgCGCGGG-CGCCcagGCa -3'
miRNA:   3'- gCGUGCUGagCgGCGCCCaGUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 11850 0.68 0.652025
Target:  5'- gCGCGCG-UUCGCgagCGCGaGcGUCAgCUGCg -3'
miRNA:   3'- -GCGUGCuGAGCG---GCGC-C-CAGUgGACG- -5'
23584 3' -60 NC_005261.1 + 11898 0.71 0.441776
Target:  5'- aCGCGCGcC-CGCCGCGGGcCcgGCCcgGCc -3'
miRNA:   3'- -GCGUGCuGaGCGGCGCCCaG--UGGa-CG- -5'
23584 3' -60 NC_005261.1 + 11934 0.69 0.553336
Target:  5'- uGCgGCGGCccgCGCCGCGGcGgcUCGCCcgGCg -3'
miRNA:   3'- gCG-UGCUGa--GCGGCGCC-C--AGUGGa-CG- -5'
23584 3' -60 NC_005261.1 + 12294 0.66 0.7584
Target:  5'- -cCGCGuC-CGCCGCGGG-CACggGCg -3'
miRNA:   3'- gcGUGCuGaGCGGCGCCCaGUGgaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.