miRNA display CGI


Results 21 - 40 of 557 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 3' -60 NC_005261.1 + 70695 0.77 0.217937
Target:  5'- gCGaCGCGACguucgcCGCCGCGGG-CGCCgcgGCg -3'
miRNA:   3'- -GC-GUGCUGa-----GCGGCGCCCaGUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 43785 0.76 0.222649
Target:  5'- gCGCGCGGagggCGCCGCGGGUgagggggCGCCggGCg -3'
miRNA:   3'- -GCGUGCUga--GCGGCGCCCA-------GUGGa-CG- -5'
23584 3' -60 NC_005261.1 + 88932 0.76 0.223178
Target:  5'- uGCGCGGCgcucacCGCCGCGGG-CuuCUGCg -3'
miRNA:   3'- gCGUGCUGa-----GCGGCGCCCaGugGACG- -5'
23584 3' -60 NC_005261.1 + 44744 0.76 0.223178
Target:  5'- uCGCGCGcUUCGCCGCGGGcgacgcgCGCCccgGCa -3'
miRNA:   3'- -GCGUGCuGAGCGGCGCCCa------GUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 38762 0.76 0.228526
Target:  5'- cCGCAgCGGCcagcgcCGCCGCGGGUCgGCCcGCg -3'
miRNA:   3'- -GCGU-GCUGa-----GCGGCGCCCAG-UGGaCG- -5'
23584 3' -60 NC_005261.1 + 44445 0.76 0.228526
Target:  5'- gGCGCGGCgUC-CCGgGGG-CACCUGCu -3'
miRNA:   3'- gCGUGCUG-AGcGGCgCCCaGUGGACG- -5'
23584 3' -60 NC_005261.1 + 66970 0.76 0.233982
Target:  5'- gCGCGCGugcuGCUCGgCGCGGGgcUCGgCUGCg -3'
miRNA:   3'- -GCGUGC----UGAGCgGCGCCC--AGUgGACG- -5'
23584 3' -60 NC_005261.1 + 29478 0.76 0.245222
Target:  5'- gGCGCGGCgCGCCGCGGa-CGCCgcgGCg -3'
miRNA:   3'- gCGUGCUGaGCGGCGCCcaGUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 117881 0.76 0.251008
Target:  5'- aGUACGGCUCgcggcaGCCGCGGGcgUCGCUcgUGCg -3'
miRNA:   3'- gCGUGCUGAG------CGGCGCCC--AGUGG--ACG- -5'
23584 3' -60 NC_005261.1 + 28583 0.76 0.251008
Target:  5'- gCGCGCGAg-CGCCgGCGGGcCGCCcGCg -3'
miRNA:   3'- -GCGUGCUgaGCGG-CGCCCaGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 133100 0.76 0.251008
Target:  5'- gCGCGCGAg-CGCCgGCGGGcCGCCcGCg -3'
miRNA:   3'- -GCGUGCUgaGCGG-CGCCCaGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 29726 0.75 0.262917
Target:  5'- uGCGCGGCgUgGCCGCGGGUagcgucgcggcgCGCgUGCg -3'
miRNA:   3'- gCGUGCUG-AgCGGCGCCCA------------GUGgACG- -5'
23584 3' -60 NC_005261.1 + 64041 0.75 0.262917
Target:  5'- gGCGCGGCUcugCGCCGCGuGGUgCGCCaccgGCu -3'
miRNA:   3'- gCGUGCUGA---GCGGCGC-CCA-GUGGa---CG- -5'
23584 3' -60 NC_005261.1 + 41632 0.75 0.265354
Target:  5'- aCGCGCGACgugcugcggcagagCGCCGCcgGGGUCACg-GCg -3'
miRNA:   3'- -GCGUGCUGa-------------GCGGCG--CCCAGUGgaCG- -5'
23584 3' -60 NC_005261.1 + 68965 0.75 0.269042
Target:  5'- gCGgGCGGCUCGCCG-GGGUCGgCgcggGCc -3'
miRNA:   3'- -GCgUGCUGAGCGGCgCCCAGUgGa---CG- -5'
23584 3' -60 NC_005261.1 + 91425 0.75 0.269042
Target:  5'- aGCGCGACgcCGCCGCGGugaaCGCgCUGCg -3'
miRNA:   3'- gCGUGCUGa-GCGGCGCCca--GUG-GACG- -5'
23584 3' -60 NC_005261.1 + 83039 0.75 0.280996
Target:  5'- aGgGCcGCUCGCCGCGGGagggggcUC-CCUGCg -3'
miRNA:   3'- gCgUGcUGAGCGGCGCCC-------AGuGGACG- -5'
23584 3' -60 NC_005261.1 + 66446 0.75 0.281637
Target:  5'- aGCGCGGCgcgCGCCGCcGGUCccGCCagGCg -3'
miRNA:   3'- gCGUGCUGa--GCGGCGcCCAG--UGGa-CG- -5'
23584 3' -60 NC_005261.1 + 65779 0.75 0.281637
Target:  5'- uCGcCGCG-CUCGCCGCGGG-CGCCcccGCc -3'
miRNA:   3'- -GC-GUGCuGAGCGGCGCCCaGUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 118172 0.75 0.281637
Target:  5'- gGCGgGGCUUgccgucuggGCCGCGGGccccgCGCCUGCc -3'
miRNA:   3'- gCGUgCUGAG---------CGGCGCCCa----GUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.