miRNA display CGI


Results 21 - 40 of 557 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 3' -60 NC_005261.1 + 98901 0.66 0.767608
Target:  5'- aCGCgcgugaacaGCGGgUCGgCG-GGGUCGgCUGCg -3'
miRNA:   3'- -GCG---------UGCUgAGCgGCgCCCAGUgGACG- -5'
23584 3' -60 NC_005261.1 + 126466 0.66 0.767608
Target:  5'- aGCGCG-CUCGCCucGCGGuagUACC-GCg -3'
miRNA:   3'- gCGUGCuGAGCGG--CGCCca-GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 60873 0.66 0.767608
Target:  5'- aCGCGCGGCcuggugcacugCGCUcaugGCGGGgggcggCGCCgGCg -3'
miRNA:   3'- -GCGUGCUGa----------GCGG----CGCCCa-----GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 135301 0.66 0.766692
Target:  5'- cCGCGCGACcggcgugUCGCCcUGGGcgGCCgUGCu -3'
miRNA:   3'- -GCGUGCUG-------AGCGGcGCCCagUGG-ACG- -5'
23584 3' -60 NC_005261.1 + 91472 0.66 0.764857
Target:  5'- gCGCcucccaGCGGCgcCGCCGCGGccgccgcccgccccGcgCGCCUGCu -3'
miRNA:   3'- -GCG------UGCUGa-GCGGCGCC--------------Ca-GUGGACG- -5'
23584 3' -60 NC_005261.1 + 71667 0.66 0.762096
Target:  5'- uGCugGACUCGUucgagCGCGGcacggccgaccagCugCUGCg -3'
miRNA:   3'- gCGugCUGAGCG-----GCGCCca-----------GugGACG- -5'
23584 3' -60 NC_005261.1 + 34123 0.66 0.7584
Target:  5'- cCGCGCGGCUgCgGUCGCGcGGagCGCCgccGCc -3'
miRNA:   3'- -GCGUGCUGA-G-CGGCGC-CCa-GUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 40097 0.66 0.7584
Target:  5'- cCGC-CGACggccgccggUGCCGCGGcGUCcccaGCCUcGCc -3'
miRNA:   3'- -GCGuGCUGa--------GCGGCGCC-CAG----UGGA-CG- -5'
23584 3' -60 NC_005261.1 + 68757 0.66 0.7584
Target:  5'- cCGC-CGGggCGCCGCGGaGcCGCCgUGUc -3'
miRNA:   3'- -GCGuGCUgaGCGGCGCC-CaGUGG-ACG- -5'
23584 3' -60 NC_005261.1 + 28404 0.66 0.7584
Target:  5'- aCGCcagauucgGCGGC-CGCCGCGGcGgaagcggCGCCgGCc -3'
miRNA:   3'- -GCG--------UGCUGaGCGGCGCC-Ca------GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 88774 0.66 0.7584
Target:  5'- uGCGCGcccgccuuccGCggCGCgCGCGGGcUCGCgCUGUu -3'
miRNA:   3'- gCGUGC----------UGa-GCG-GCGCCC-AGUG-GACG- -5'
23584 3' -60 NC_005261.1 + 12294 0.66 0.7584
Target:  5'- -cCGCGuC-CGCCGCGGG-CACggGCg -3'
miRNA:   3'- gcGUGCuGaGCGGCGCCCaGUGgaCG- -5'
23584 3' -60 NC_005261.1 + 30567 0.66 0.7584
Target:  5'- aCGCcCGGCgggGCCGCGGaGUUugC-GCg -3'
miRNA:   3'- -GCGuGCUGag-CGGCGCC-CAGugGaCG- -5'
23584 3' -60 NC_005261.1 + 39196 0.66 0.7584
Target:  5'- uCGCGCGGg-UGCUGUGGGcgcgCGCCgccGCg -3'
miRNA:   3'- -GCGUGCUgaGCGGCGCCCa---GUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 109222 0.66 0.7584
Target:  5'- gGCGCGGCaCGCCGCGcG-CugCaGCg -3'
miRNA:   3'- gCGUGCUGaGCGGCGCcCaGugGaCG- -5'
23584 3' -60 NC_005261.1 + 47695 0.66 0.7584
Target:  5'- gGCGCGGCggcggggaugCGCgCGCGGaUgGCCUuGCg -3'
miRNA:   3'- gCGUGCUGa---------GCG-GCGCCcAgUGGA-CG- -5'
23584 3' -60 NC_005261.1 + 67304 0.66 0.7584
Target:  5'- gCGCGCGcGC-CGCCGUcGGcCGCCgccGCg -3'
miRNA:   3'- -GCGUGC-UGaGCGGCGcCCaGUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 11202 0.66 0.7584
Target:  5'- gCGUucgACGACUCcCUGCucGGGccgcCGCCUGCg -3'
miRNA:   3'- -GCG---UGCUGAGcGGCG--CCCa---GUGGACG- -5'
23584 3' -60 NC_005261.1 + 34167 0.66 0.7584
Target:  5'- aGCugGACgCGCuCGCGGccGagGCgCUGCg -3'
miRNA:   3'- gCGugCUGaGCG-GCGCC--CagUG-GACG- -5'
23584 3' -60 NC_005261.1 + 31657 0.66 0.7584
Target:  5'- cCGCGCGGCg-GCCcCGGGgccggcgcgCGCCgGCc -3'
miRNA:   3'- -GCGUGCUGagCGGcGCCCa--------GUGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.