miRNA display CGI


Results 41 - 60 of 557 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 3' -60 NC_005261.1 + 40097 0.66 0.7584
Target:  5'- cCGC-CGACggccgccggUGCCGCGGcGUCcccaGCCUcGCc -3'
miRNA:   3'- -GCGuGCUGa--------GCGGCGCC-CAG----UGGA-CG- -5'
23584 3' -60 NC_005261.1 + 47346 0.66 0.7584
Target:  5'- gGCgACGACgcagucgaaGCCGaCGGG-CACCaGCg -3'
miRNA:   3'- gCG-UGCUGag-------CGGC-GCCCaGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 34123 0.66 0.7584
Target:  5'- cCGCGCGGCUgCgGUCGCGcGGagCGCCgccGCc -3'
miRNA:   3'- -GCGUGCUGA-G-CGGCGC-CCa-GUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 88774 0.66 0.7584
Target:  5'- uGCGCGcccgccuuccGCggCGCgCGCGGGcUCGCgCUGUu -3'
miRNA:   3'- gCGUGC----------UGa-GCG-GCGCCC-AGUG-GACG- -5'
23584 3' -60 NC_005261.1 + 31657 0.66 0.7584
Target:  5'- cCGCGCGGCg-GCCcCGGGgccggcgcgCGCCgGCc -3'
miRNA:   3'- -GCGUGCUGagCGGcGCCCa--------GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 39196 0.66 0.7584
Target:  5'- uCGCGCGGg-UGCUGUGGGcgcgCGCCgccGCg -3'
miRNA:   3'- -GCGUGCUgaGCGGCGCCCa---GUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 6588 0.66 0.755617
Target:  5'- gCGCcCGGggggcccgucggucCUCGCgGCGGG-CGCCagGCg -3'
miRNA:   3'- -GCGuGCU--------------GAGCGgCGCCCaGUGGa-CG- -5'
23584 3' -60 NC_005261.1 + 130690 0.66 0.752824
Target:  5'- gCGCGCGugcugcucgagcacCUCGCCGaGGacGUCACCUucGCg -3'
miRNA:   3'- -GCGUGCu-------------GAGCGGCgCC--CAGUGGA--CG- -5'
23584 3' -60 NC_005261.1 + 65367 0.66 0.749087
Target:  5'- gGCAUGGCcCGCaCGCccGGcaUUACCUGCg -3'
miRNA:   3'- gCGUGCUGaGCG-GCGc-CC--AGUGGACG- -5'
23584 3' -60 NC_005261.1 + 118794 0.66 0.749087
Target:  5'- gCGCGCuGAUggCGCaCGUGGG-CGUCUGCg -3'
miRNA:   3'- -GCGUG-CUGa-GCG-GCGCCCaGUGGACG- -5'
23584 3' -60 NC_005261.1 + 49832 0.66 0.749087
Target:  5'- uCGUGCucCUCGCCGuCGaGGUaCACCUuggGCg -3'
miRNA:   3'- -GCGUGcuGAGCGGC-GC-CCA-GUGGA---CG- -5'
23584 3' -60 NC_005261.1 + 71187 0.66 0.749087
Target:  5'- gGCGCaGCUCGCgggGCGcGGcCAgCUGCg -3'
miRNA:   3'- gCGUGcUGAGCGg--CGC-CCaGUgGACG- -5'
23584 3' -60 NC_005261.1 + 54912 0.66 0.749087
Target:  5'- gCGCGCGuagcgagcACUCGcCCGCGagcagcGUCACgaGCa -3'
miRNA:   3'- -GCGUGC--------UGAGC-GGCGCc-----CAGUGgaCG- -5'
23584 3' -60 NC_005261.1 + 19182 0.66 0.749087
Target:  5'- aCGCGCGGC-CGCgGgCGcGUUACCgucgGCg -3'
miRNA:   3'- -GCGUGCUGaGCGgC-GCcCAGUGGa---CG- -5'
23584 3' -60 NC_005261.1 + 53931 0.66 0.749087
Target:  5'- aCGCcuuCGGCgcCGCCGgggcCGGGgccgccggcggCACCUGCg -3'
miRNA:   3'- -GCGu--GCUGa-GCGGC----GCCCa----------GUGGACG- -5'
23584 3' -60 NC_005261.1 + 56737 0.66 0.749087
Target:  5'- gCGCGCGccgcGCUaGCCGCGGc---CCUGCu -3'
miRNA:   3'- -GCGUGC----UGAgCGGCGCCcaguGGACG- -5'
23584 3' -60 NC_005261.1 + 102549 0.66 0.749087
Target:  5'- -cCGgGGCUCGCCgGCGGGggugCgGCCgGCa -3'
miRNA:   3'- gcGUgCUGAGCGG-CGCCCa---G-UGGaCG- -5'
23584 3' -60 NC_005261.1 + 57423 0.66 0.749087
Target:  5'- gCGCugGGCUCGgCG-GGGcUCuACC-GCa -3'
miRNA:   3'- -GCGugCUGAGCgGCgCCC-AG-UGGaCG- -5'
23584 3' -60 NC_005261.1 + 121617 0.66 0.749087
Target:  5'- gGCGCGGa--G-CGCGGGUauaccuucggCGCCUGCu -3'
miRNA:   3'- gCGUGCUgagCgGCGCCCA----------GUGGACG- -5'
23584 3' -60 NC_005261.1 + 5205 0.66 0.749087
Target:  5'- uGCGCGGUggcgCGcCCGCGGGUgGCgCaGCg -3'
miRNA:   3'- gCGUGCUGa---GC-GGCGCCCAgUG-GaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.