miRNA display CGI


Results 1 - 20 of 557 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 3' -60 NC_005261.1 + 111011 1.1 0.001054
Target:  5'- cCGCACGACUCGCCGCGGGUCACCUGCc -3'
miRNA:   3'- -GCGUGCUGAGCGGCGCCCAGUGGACG- -5'
23584 3' -60 NC_005261.1 + 75194 0.84 0.070381
Target:  5'- uGCGCGACcgccUCGCCGCGGG-CGCCgGCg -3'
miRNA:   3'- gCGUGCUG----AGCGGCGCCCaGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 70398 0.83 0.078082
Target:  5'- aCGCACGACgCGCCGCGcacaaaGGUCACCaGCa -3'
miRNA:   3'- -GCGUGCUGaGCGGCGC------CCAGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 1921 0.83 0.082229
Target:  5'- gCGCGCGGCgcacugCGCCGCGGGcagCACCgcgGCg -3'
miRNA:   3'- -GCGUGCUGa-----GCGGCGCCCa--GUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 106438 0.83 0.082229
Target:  5'- gCGCGCGGCgcacugCGCCGCGGGcagCACCgcgGCg -3'
miRNA:   3'- -GCGUGCUGa-----GCGGCGCCCa--GUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 16851 0.83 0.086586
Target:  5'- gGCGCcGC-CGCCGCGGGgCGCCUGCa -3'
miRNA:   3'- gCGUGcUGaGCGGCGCCCaGUGGACG- -5'
23584 3' -60 NC_005261.1 + 134199 0.81 0.109048
Target:  5'- gGCGCGGCUCgGCgCGCGGGUCGCg-GCg -3'
miRNA:   3'- gCGUGCUGAG-CG-GCGCCCAGUGgaCG- -5'
23584 3' -60 NC_005261.1 + 97375 0.8 0.140354
Target:  5'- cCGgGCGugUCGCCGCGcGGcuuucgCGCCUGCc -3'
miRNA:   3'- -GCgUGCugAGCGGCGC-CCa-----GUGGACG- -5'
23584 3' -60 NC_005261.1 + 121504 0.8 0.140354
Target:  5'- cCGCGCGGCUCGCCGaGGGccagUACCgGCg -3'
miRNA:   3'- -GCGUGCUGAGCGGCgCCCa---GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 100909 0.78 0.162905
Target:  5'- cCGCGC-AC-CGCCGCGaGcGUCGCCUGCa -3'
miRNA:   3'- -GCGUGcUGaGCGGCGC-C-CAGUGGACG- -5'
23584 3' -60 NC_005261.1 + 13972 0.78 0.162905
Target:  5'- gCGCGCgGGCggCGCCGCGcGG-CGCCUGCc -3'
miRNA:   3'- -GCGUG-CUGa-GCGGCGC-CCaGUGGACG- -5'
23584 3' -60 NC_005261.1 + 104449 0.78 0.184134
Target:  5'- cCGCGCGgggcccagcGCUCGCCGCGGGcccCGCgaGCg -3'
miRNA:   3'- -GCGUGC---------UGAGCGGCGCCCa--GUGgaCG- -5'
23584 3' -60 NC_005261.1 + 96006 0.77 0.188663
Target:  5'- gCGCGCGgcggaGCUCGCgGCGGGgCGCCcGCg -3'
miRNA:   3'- -GCGUGC-----UGAGCGgCGCCCaGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 101830 0.77 0.188663
Target:  5'- gCGCGCGGCUgaucucCGCCGCGcgcccgccGGcCGCCUGCa -3'
miRNA:   3'- -GCGUGCUGA------GCGGCGC--------CCaGUGGACG- -5'
23584 3' -60 NC_005261.1 + 103380 0.77 0.188663
Target:  5'- cCGCGCGcCgccgCGCCGCGGc-CGCCUGCg -3'
miRNA:   3'- -GCGUGCuGa---GCGGCGCCcaGUGGACG- -5'
23584 3' -60 NC_005261.1 + 4478 0.77 0.19329
Target:  5'- uCGCGCGGC--GCCGCGGcGUaGCCUGCg -3'
miRNA:   3'- -GCGUGCUGagCGGCGCC-CAgUGGACG- -5'
23584 3' -60 NC_005261.1 + 108995 0.77 0.19329
Target:  5'- uCGCGCGGC--GCCGCGGcGUaGCCUGCg -3'
miRNA:   3'- -GCGUGCUGagCGGCGCC-CAgUGGACG- -5'
23584 3' -60 NC_005261.1 + 50825 0.77 0.202842
Target:  5'- cCGCGCGGCUuggCGCCGCGagcuGG-CGCCUGUg -3'
miRNA:   3'- -GCGUGCUGA---GCGGCGC----CCaGUGGACG- -5'
23584 3' -60 NC_005261.1 + 118941 0.77 0.20777
Target:  5'- cCGCGCGGCUgGCCGCGGcG-CAcguggccaagguCCUGCa -3'
miRNA:   3'- -GCGUGCUGAgCGGCGCC-CaGU------------GGACG- -5'
23584 3' -60 NC_005261.1 + 118285 0.77 0.20777
Target:  5'- uCGUgACGGC-CGCCGCGGG-CACCgggGCg -3'
miRNA:   3'- -GCG-UGCUGaGCGGCGCCCaGUGGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.