miRNA display CGI


Results 1 - 20 of 557 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 3' -60 NC_005261.1 + 1319 0.7 0.514938
Target:  5'- gGCACGcGCUccgggacgcCGCCGCGccgCGCCUGCa -3'
miRNA:   3'- gCGUGC-UGA---------GCGGCGCccaGUGGACG- -5'
23584 3' -60 NC_005261.1 + 1769 0.66 0.738732
Target:  5'- gCGCGCGAgUCuggggcuGCCGCGuGcC-CCUGCg -3'
miRNA:   3'- -GCGUGCUgAG-------CGGCGCcCaGuGGACG- -5'
23584 3' -60 NC_005261.1 + 1774 0.67 0.710954
Target:  5'- gCGCACGuuggCGCCGCGGcagaGCCgcaGCg -3'
miRNA:   3'- -GCGUGCuga-GCGGCGCCcag-UGGa--CG- -5'
23584 3' -60 NC_005261.1 + 1921 0.83 0.082229
Target:  5'- gCGCGCGGCgcacugCGCCGCGGGcagCACCgcgGCg -3'
miRNA:   3'- -GCGUGCUGa-----GCGGCGCCCa--GUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 2058 0.66 0.724443
Target:  5'- cCGCAggcagagguacuCGACcgCGCCGCGGaaggccaggucccgcGUCGCgaGCa -3'
miRNA:   3'- -GCGU------------GCUGa-GCGGCGCC---------------CAGUGgaCG- -5'
23584 3' -60 NC_005261.1 + 3200 0.68 0.622252
Target:  5'- gGCGuCGGcCUCGCCGcCGcGGcCGCgUGCg -3'
miRNA:   3'- gCGU-GCU-GAGCGGC-GC-CCaGUGgACG- -5'
23584 3' -60 NC_005261.1 + 3473 0.7 0.534015
Target:  5'- cCGcCAUG-C-CGCCGCGGGUCGCgggUGCc -3'
miRNA:   3'- -GC-GUGCuGaGCGGCGCCCAGUGg--ACG- -5'
23584 3' -60 NC_005261.1 + 3580 0.67 0.701243
Target:  5'- gCGCGCGcuccACcgCGUCGCGGGccgCGCCaaGCa -3'
miRNA:   3'- -GCGUGC----UGa-GCGGCGCCCa--GUGGa-CG- -5'
23584 3' -60 NC_005261.1 + 3819 0.68 0.622252
Target:  5'- uCGCGCG-CU-GCCGCGGGcccgggCGCUgGCg -3'
miRNA:   3'- -GCGUGCuGAgCGGCGCCCa-----GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 3879 0.69 0.573841
Target:  5'- aGCACGGCgcgcagcucggcgagCGCggCGCGGG-CGCCcGCg -3'
miRNA:   3'- gCGUGCUGa--------------GCG--GCGCCCaGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 3883 0.68 0.642106
Target:  5'- cCGCGCGg--CGgCGCGGGg-GCUUGCg -3'
miRNA:   3'- -GCGUGCugaGCgGCGCCCagUGGACG- -5'
23584 3' -60 NC_005261.1 + 4283 0.67 0.681663
Target:  5'- gGCACGAacacgGCCGCGGGcC-CCgcgGCc -3'
miRNA:   3'- gCGUGCUgag--CGGCGCCCaGuGGa--CG- -5'
23584 3' -60 NC_005261.1 + 4478 0.77 0.19329
Target:  5'- uCGCGCGGC--GCCGCGGcGUaGCCUGCg -3'
miRNA:   3'- -GCGUGCUGagCGGCGCC-CAgUGGACG- -5'
23584 3' -60 NC_005261.1 + 4523 0.69 0.553336
Target:  5'- cCGCGCGGg-CGCCGCGGcGagggCGCCggGCc -3'
miRNA:   3'- -GCGUGCUgaGCGGCGCC-Ca---GUGGa-CG- -5'
23584 3' -60 NC_005261.1 + 4887 0.7 0.524444
Target:  5'- uGCGCGGCagCGCCGCGcG-CGCgUGCc -3'
miRNA:   3'- gCGUGCUGa-GCGGCGCcCaGUGgACG- -5'
23584 3' -60 NC_005261.1 + 4980 0.69 0.591555
Target:  5'- uCGCGCG-C-CGCUGCGGGUagugcucCGCCaUGUa -3'
miRNA:   3'- -GCGUGCuGaGCGGCGCCCA-------GUGG-ACG- -5'
23584 3' -60 NC_005261.1 + 5114 0.66 0.767608
Target:  5'- cCGC-CaGCUCGgCGCGGGcggccCGCCgGCg -3'
miRNA:   3'- -GCGuGcUGAGCgGCGCCCa----GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 5205 0.66 0.749087
Target:  5'- uGCGCGGUggcgCGcCCGCGGGUgGCgCaGCg -3'
miRNA:   3'- gCGUGCUGa---GC-GGCGCCCAgUG-GaCG- -5'
23584 3' -60 NC_005261.1 + 5283 0.67 0.691476
Target:  5'- gGC-CGGCcgcggUGCgCGCGGGUC-CCUGg -3'
miRNA:   3'- gCGuGCUGa----GCG-GCGCCCAGuGGACg -5'
23584 3' -60 NC_005261.1 + 5624 0.66 0.739678
Target:  5'- gCGCccccugGCGGCUCGCCGggcCGGG-CGuCCgcggGCg -3'
miRNA:   3'- -GCG------UGCUGAGCGGC---GCCCaGU-GGa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.