miRNA display CGI


Results 1 - 20 of 557 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 3' -60 NC_005261.1 + 136458 0.68 0.642106
Target:  5'- gGCACgcggcagccccaGACUCGCgCGCGGG-CAgCaGCg -3'
miRNA:   3'- gCGUG------------CUGAGCG-GCGCCCaGUgGaCG- -5'
23584 3' -60 NC_005261.1 + 136448 0.7 0.486864
Target:  5'- cCGCuGCGGCUCuGCCGCGGcGcCaACgUGCg -3'
miRNA:   3'- -GCG-UGCUGAG-CGGCGCC-CaG-UGgACG- -5'
23584 3' -60 NC_005261.1 + 136280 0.68 0.601438
Target:  5'- gCGCACGugUaccugcgCGCCGCGGuGcUGCCcGCg -3'
miRNA:   3'- -GCGUGCugA-------GCGGCGCC-CaGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 136112 0.67 0.681663
Target:  5'- aGCGCG-CUCGgCGCGcaGGgcgugCugCUGCu -3'
miRNA:   3'- gCGUGCuGAGCgGCGC--CCa----GugGACG- -5'
23584 3' -60 NC_005261.1 + 136001 0.68 0.612333
Target:  5'- cCGC-CGGugCGCgGCGGGcucucgCACCUGCu -3'
miRNA:   3'- -GCGuGCUgaGCGgCGCCCa-----GUGGACG- -5'
23584 3' -60 NC_005261.1 + 135842 0.67 0.691476
Target:  5'- gGCGCG-CUCGCCGCcagcgCGCCgcUGCg -3'
miRNA:   3'- gCGUGCuGAGCGGCGccca-GUGG--ACG- -5'
23584 3' -60 NC_005261.1 + 135747 0.7 0.514938
Target:  5'- gGCGCGcCUCaGCCGCGcGGUgCGCUccgGCg -3'
miRNA:   3'- gCGUGCuGAG-CGGCGC-CCA-GUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 135589 0.66 0.749087
Target:  5'- gGcCACGGCcggCGCCGUGcuGGagaACCUGCg -3'
miRNA:   3'- gC-GUGCUGa--GCGGCGC--CCag-UGGACG- -5'
23584 3' -60 NC_005261.1 + 135552 0.71 0.433043
Target:  5'- aGC-CGGCgCGCCGcCGGGUCcCCaGCg -3'
miRNA:   3'- gCGuGCUGaGCGGC-GCCCAGuGGaCG- -5'
23584 3' -60 NC_005261.1 + 135488 0.67 0.701243
Target:  5'- cCGCgACGGCcCGCCGCGGcgcaagcgcaaGUCgGCCgggGCc -3'
miRNA:   3'- -GCG-UGCUGaGCGGCGCC-----------CAG-UGGa--CG- -5'
23584 3' -60 NC_005261.1 + 135454 0.67 0.681663
Target:  5'- gGCGCGGg-CGCUGCGGGaccUCguaCUGCg -3'
miRNA:   3'- gCGUGCUgaGCGGCGCCC---AGug-GACG- -5'
23584 3' -60 NC_005261.1 + 135301 0.66 0.766692
Target:  5'- cCGCGCGACcggcgugUCGCCcUGGGcgGCCgUGCu -3'
miRNA:   3'- -GCGUGCUG-------AGCGGcGCCCagUGG-ACG- -5'
23584 3' -60 NC_005261.1 + 135022 0.69 0.57286
Target:  5'- cCGCACG-Cg-GCCGCGGcGgcgaggccgaCGCCUGCg -3'
miRNA:   3'- -GCGUGCuGagCGGCGCC-Ca---------GUGGACG- -5'
23584 3' -60 NC_005261.1 + 134562 0.69 0.553336
Target:  5'- uGCugGGCggCGCCGCGGcugCGCaggGCg -3'
miRNA:   3'- gCGugCUGa-GCGGCGCCca-GUGga-CG- -5'
23584 3' -60 NC_005261.1 + 134363 0.68 0.642106
Target:  5'- uGCGCGccguGCUCgccgGCCGCGcGG-CGCCgGCg -3'
miRNA:   3'- gCGUGC----UGAG----CGGCGC-CCaGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 134319 0.67 0.681663
Target:  5'- gGC-CGGCgccggCGgCGCGGG-CGCCcGCg -3'
miRNA:   3'- gCGuGCUGa----GCgGCGCCCaGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 134199 0.81 0.109048
Target:  5'- gGCGCGGCUCgGCgCGCGGGUCGCg-GCg -3'
miRNA:   3'- gCGUGCUGAG-CG-GCGCCCAGUGgaCG- -5'
23584 3' -60 NC_005261.1 + 134053 0.71 0.450607
Target:  5'- aGCGCGAa--GCuCGCGGGcCcggACCUGCa -3'
miRNA:   3'- gCGUGCUgagCG-GCGCCCaG---UGGACG- -5'
23584 3' -60 NC_005261.1 + 133929 0.67 0.710954
Target:  5'- gCGCuacGCGGCg-GCCGCGGG--GCCcGCg -3'
miRNA:   3'- -GCG---UGCUGagCGGCGCCCagUGGaCG- -5'
23584 3' -60 NC_005261.1 + 133861 0.72 0.415884
Target:  5'- gCGCGCGACU-GCCGCGcc-UACCUGUg -3'
miRNA:   3'- -GCGUGCUGAgCGGCGCccaGUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.