Results 1 - 20 of 557 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23584 | 3' | -60 | NC_005261.1 | + | 111011 | 1.1 | 0.001054 |
Target: 5'- cCGCACGACUCGCCGCGGGUCACCUGCc -3' miRNA: 3'- -GCGUGCUGAGCGGCGCCCAGUGGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 75194 | 0.84 | 0.070381 |
Target: 5'- uGCGCGACcgccUCGCCGCGGG-CGCCgGCg -3' miRNA: 3'- gCGUGCUG----AGCGGCGCCCaGUGGaCG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 16851 | 0.83 | 0.086586 |
Target: 5'- gGCGCcGC-CGCCGCGGGgCGCCUGCa -3' miRNA: 3'- gCGUGcUGaGCGGCGCCCaGUGGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 70398 | 0.83 | 0.078082 |
Target: 5'- aCGCACGACgCGCCGCGcacaaaGGUCACCaGCa -3' miRNA: 3'- -GCGUGCUGaGCGGCGC------CCAGUGGaCG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 1921 | 0.83 | 0.082229 |
Target: 5'- gCGCGCGGCgcacugCGCCGCGGGcagCACCgcgGCg -3' miRNA: 3'- -GCGUGCUGa-----GCGGCGCCCa--GUGGa--CG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 106438 | 0.83 | 0.082229 |
Target: 5'- gCGCGCGGCgcacugCGCCGCGGGcagCACCgcgGCg -3' miRNA: 3'- -GCGUGCUGa-----GCGGCGCCCa--GUGGa--CG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 134199 | 0.81 | 0.109048 |
Target: 5'- gGCGCGGCUCgGCgCGCGGGUCGCg-GCg -3' miRNA: 3'- gCGUGCUGAG-CG-GCGCCCAGUGgaCG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 97375 | 0.8 | 0.140354 |
Target: 5'- cCGgGCGugUCGCCGCGcGGcuuucgCGCCUGCc -3' miRNA: 3'- -GCgUGCugAGCGGCGC-CCa-----GUGGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 121504 | 0.8 | 0.140354 |
Target: 5'- cCGCGCGGCUCGCCGaGGGccagUACCgGCg -3' miRNA: 3'- -GCGUGCUGAGCGGCgCCCa---GUGGaCG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 104449 | 0.78 | 0.184134 |
Target: 5'- cCGCGCGgggcccagcGCUCGCCGCGGGcccCGCgaGCg -3' miRNA: 3'- -GCGUGC---------UGAGCGGCGCCCa--GUGgaCG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 13972 | 0.78 | 0.162905 |
Target: 5'- gCGCGCgGGCggCGCCGCGcGG-CGCCUGCc -3' miRNA: 3'- -GCGUG-CUGa-GCGGCGC-CCaGUGGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 100909 | 0.78 | 0.162905 |
Target: 5'- cCGCGC-AC-CGCCGCGaGcGUCGCCUGCa -3' miRNA: 3'- -GCGUGcUGaGCGGCGC-C-CAGUGGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 118941 | 0.77 | 0.20777 |
Target: 5'- cCGCGCGGCUgGCCGCGGcG-CAcguggccaagguCCUGCa -3' miRNA: 3'- -GCGUGCUGAgCGGCGCC-CaGU------------GGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 4478 | 0.77 | 0.19329 |
Target: 5'- uCGCGCGGC--GCCGCGGcGUaGCCUGCg -3' miRNA: 3'- -GCGUGCUGagCGGCGCC-CAgUGGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 101830 | 0.77 | 0.188663 |
Target: 5'- gCGCGCGGCUgaucucCGCCGCGcgcccgccGGcCGCCUGCa -3' miRNA: 3'- -GCGUGCUGA------GCGGCGC--------CCaGUGGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 103380 | 0.77 | 0.188663 |
Target: 5'- cCGCGCGcCgccgCGCCGCGGc-CGCCUGCg -3' miRNA: 3'- -GCGUGCuGa---GCGGCGCCcaGUGGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 50825 | 0.77 | 0.202842 |
Target: 5'- cCGCGCGGCUuggCGCCGCGagcuGG-CGCCUGUg -3' miRNA: 3'- -GCGUGCUGA---GCGGCGC----CCaGUGGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 70695 | 0.77 | 0.217937 |
Target: 5'- gCGaCGCGACguucgcCGCCGCGGG-CGCCgcgGCg -3' miRNA: 3'- -GC-GUGCUGa-----GCGGCGCCCaGUGGa--CG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 108995 | 0.77 | 0.19329 |
Target: 5'- uCGCGCGGC--GCCGCGGcGUaGCCUGCg -3' miRNA: 3'- -GCGUGCUGagCGGCGCC-CAgUGGACG- -5' |
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23584 | 3' | -60 | NC_005261.1 | + | 96006 | 0.77 | 0.188663 |
Target: 5'- gCGCGCGgcggaGCUCGCgGCGGGgCGCCcGCg -3' miRNA: 3'- -GCGUGC-----UGAGCGgCGCCCaGUGGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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