Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23584 | 5' | -55.2 | NC_005261.1 | + | 111048 | 1.08 | 0.0037 |
Target: 5'- gCUACAAGUCCUGCGACGUGCCCGUCGu -3' miRNA: 3'- -GAUGUUCAGGACGCUGCACGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 73770 | 0.79 | 0.303964 |
Target: 5'- uCUACGAGgcgcuggCCUGCGACGUGCgCG-CGg -3' miRNA: 3'- -GAUGUUCa------GGACGCUGCACGgGCaGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 63697 | 0.77 | 0.380698 |
Target: 5'- aUACAGGUUCUGCGGCGUguuGCCCagGUCc -3' miRNA: 3'- gAUGUUCAGGACGCUGCA---CGGG--CAGc -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 108968 | 0.76 | 0.441598 |
Target: 5'- -aGCGGGcCCUccaGCGGCGgcgGCCCGUCGc -3' miRNA: 3'- gaUGUUCaGGA---CGCUGCa--CGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 4451 | 0.76 | 0.441598 |
Target: 5'- -aGCGGGcCCUccaGCGGCGgcgGCCCGUCGc -3' miRNA: 3'- gaUGUUCaGGA---CGCUGCa--CGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 5238 | 0.74 | 0.527292 |
Target: 5'- gUACAGGUCgaGCGuggccggcuCGUGCCCGcCGg -3' miRNA: 3'- gAUGUUCAGgaCGCu--------GCACGGGCaGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 135039 | 0.73 | 0.608184 |
Target: 5'- -gGCGAGgccgacgCCUGCGGCGgcagcgGCCCGcCGc -3' miRNA: 3'- gaUGUUCa------GGACGCUGCa-----CGGGCaGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 109756 | 0.71 | 0.700266 |
Target: 5'- gUACAGGUCgaGCGugGccggcucgGCCCGcCGg -3' miRNA: 3'- gAUGUUCAGgaCGCugCa-------CGGGCaGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 108564 | 0.71 | 0.679981 |
Target: 5'- -cGCAcGUCgUGCGACGUGCgCG-CGa -3' miRNA: 3'- gaUGUuCAGgACGCUGCACGgGCaGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 98747 | 0.71 | 0.72032 |
Target: 5'- -gGCGAucaucGUCC-GCGGCGgGCCCGUUGg -3' miRNA: 3'- gaUGUU-----CAGGaCGCUGCaCGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 88047 | 0.71 | 0.72032 |
Target: 5'- gCUGCAccGGcUgCUGCGGCgGUGCCCG-CGg -3' miRNA: 3'- -GAUGU--UC-AgGACGCUG-CACGGGCaGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 118246 | 0.7 | 0.749806 |
Target: 5'- cCUACGccgUCUGCGGCGUGCCgGUg- -3' miRNA: 3'- -GAUGUucaGGACGCUGCACGGgCAgc -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 80726 | 0.7 | 0.768956 |
Target: 5'- -aAgAAGgcccgCCgccGgGACGUGCCCGUCGc -3' miRNA: 3'- gaUgUUCa----GGa--CgCUGCACGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 18594 | 0.7 | 0.768956 |
Target: 5'- -gGCGcAGcCgUGCGAgGUGUCCGUCGc -3' miRNA: 3'- gaUGU-UCaGgACGCUgCACGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 17253 | 0.7 | 0.768956 |
Target: 5'- aCUACGGGgCCUGCGGCGgcacgcGcCCCG-CGg -3' miRNA: 3'- -GAUGUUCaGGACGCUGCa-----C-GGGCaGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 89196 | 0.7 | 0.740069 |
Target: 5'- -gGCGGcugCCUGCG-CGUGCCCGcCGc -3' miRNA: 3'- gaUGUUca-GGACGCuGCACGGGCaGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 22695 | 0.69 | 0.778352 |
Target: 5'- -gACGGGcCCgGCGACGaGgCCGUCGa -3' miRNA: 3'- gaUGUUCaGGaCGCUGCaCgGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 74719 | 0.69 | 0.823171 |
Target: 5'- uUGCGAGUUCaucGCGAC--GCCCGUCu -3' miRNA: 3'- gAUGUUCAGGa--CGCUGcaCGGGCAGc -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 29872 | 0.69 | 0.796738 |
Target: 5'- -gGCAGGgaugcgCCUGCGACGgcggcgGCCCuggcgcggGUCGc -3' miRNA: 3'- gaUGUUCa-----GGACGCUGCa-----CGGG--------CAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 83376 | 0.69 | 0.775547 |
Target: 5'- gUGCGGGUucagCCUGCGGCGccggcagcuagcccUGCCCG-CGu -3' miRNA: 3'- gAUGUUCA----GGACGCUGC--------------ACGGGCaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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