miRNA display CGI


Results 41 - 60 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 137675 0.66 0.839008
Target:  5'- aCCCCGGGgcccccCACCgcccCUCGuGCaGCGGGc -3'
miRNA:   3'- -GGGGUCU------GUGGauu-GGGCuCG-CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 60964 0.66 0.805832
Target:  5'- aUgCAGACGCCgc-CCgCGAGCGCGc- -3'
miRNA:   3'- gGgGUCUGUGGauuGG-GCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 28225 0.66 0.839008
Target:  5'- gCCCCAGcUACCc--CCCGGcGCGCGcGa -3'
miRNA:   3'- -GGGGUCuGUGGauuGGGCU-CGCGC-Cc -5'
23586 5' -58.5 NC_005261.1 + 109864 0.66 0.839008
Target:  5'- cUCCUggGGGCAgCggGGCCCGcGgGCGGGc -3'
miRNA:   3'- -GGGG--UCUGUgGa-UUGGGCuCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 77964 0.66 0.821917
Target:  5'- aCCCCGGGCGCCUcuucacggccgccGcuCCCGc-CGCGGcGg -3'
miRNA:   3'- -GGGGUCUGUGGA-------------Uu-GGGCucGCGCC-C- -5'
23586 5' -58.5 NC_005261.1 + 85255 0.66 0.822748
Target:  5'- cCCCCGccugccGGCGCCgca-CCG-GCGCGGc -3'
miRNA:   3'- -GGGGU------CUGUGGauugGGCuCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 65068 0.66 0.827697
Target:  5'- cCCCCGGccgagcaacaACGCCgccuggcggcgcgAGCCCGGcccggggaccGCGCGGa -3'
miRNA:   3'- -GGGGUC----------UGUGGa------------UUGGGCU----------CGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 112473 0.66 0.822748
Target:  5'- uCCCCAGGgugggcaaAUCgauCgCCGAGCGCGGc -3'
miRNA:   3'- -GGGGUCUg-------UGGauuG-GGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 134805 0.66 0.830963
Target:  5'- gCCUGGACG-CUGGCCCGcGCGCu-- -3'
miRNA:   3'- gGGGUCUGUgGAUUGGGCuCGCGccc -5'
23586 5' -58.5 NC_005261.1 + 5627 0.66 0.830963
Target:  5'- cCCCCuGGCGgCUcgccGGgCCGGGCguccGCGGGc -3'
miRNA:   3'- -GGGGuCUGUgGA----UUgGGCUCG----CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 41074 0.66 0.822748
Target:  5'- aCCCAGccggccgggccgGCGCC-AGCgccuCCGAGCGUGGc -3'
miRNA:   3'- gGGGUC------------UGUGGaUUG----GGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 83429 0.66 0.822748
Target:  5'- aCCUGGugGCCU-ACgCGgaGGCGgCGGGg -3'
miRNA:   3'- gGGGUCugUGGAuUGgGC--UCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 135967 0.66 0.826054
Target:  5'- gCCCGGcgaggacgaGCGCCggcGGCCUGAGUggccgccggugcgcgGCGGGc -3'
miRNA:   3'- gGGGUC---------UGUGGa--UUGGGCUCG---------------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 44771 0.66 0.830963
Target:  5'- gCCCCGG-CACCgcGCUgGGGC-CGGu -3'
miRNA:   3'- -GGGGUCuGUGGauUGGgCUCGcGCCc -5'
23586 5' -58.5 NC_005261.1 + 75799 0.66 0.822748
Target:  5'- gCCCGGcgaccggcuCGCgCUGGCCucggCGGGCGCGGa -3'
miRNA:   3'- gGGGUCu--------GUG-GAUUGG----GCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 107508 0.66 0.830963
Target:  5'- gCUCGGGC-CUggcGGCCCG-GCGcCGGGg -3'
miRNA:   3'- gGGGUCUGuGGa--UUGGGCuCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 109623 0.66 0.822748
Target:  5'- gCCaCAGcucCGCC-AGCUCG-GCGCGGGc -3'
miRNA:   3'- gGG-GUCu--GUGGaUUGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 108334 0.66 0.822748
Target:  5'- gCUCGcGCGCUgccgcgGGCCCGGGCGCuGGc -3'
miRNA:   3'- gGGGUcUGUGGa-----UUGGGCUCGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 10396 0.66 0.805832
Target:  5'- gCCCCGuccGCugCUcgcGGCCgCGAGCGCGa- -3'
miRNA:   3'- -GGGGUc--UGugGA---UUGG-GCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 63227 0.66 0.834202
Target:  5'- aCUCCAGggGCgggucguucuuggcgAUCUGcACCCG-GCGCGGGc -3'
miRNA:   3'- -GGGGUC--UG---------------UGGAU-UGGGCuCGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.