miRNA display CGI


Results 41 - 60 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 130596 0.71 0.564387
Target:  5'- gCCCC--GCGCCUGGCCCGucuuugccuGcgccuucaacagcGCGCGGGg -3'
miRNA:   3'- -GGGGucUGUGGAUUGGGC---------U-------------CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 129973 0.66 0.822748
Target:  5'- aUCCAGAC-CC-AGCCgGGGCuugaGUGGGa -3'
miRNA:   3'- gGGGUCUGuGGaUUGGgCUCG----CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 128792 0.7 0.624744
Target:  5'- gUCUGGGCGCCcgGGCCCGcG-GCGGGg -3'
miRNA:   3'- gGGGUCUGUGGa-UUGGGCuCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 128777 0.68 0.723277
Target:  5'- cCCCCucugcggggaGGGgGCUU-GCCCGGGUGgGGGu -3'
miRNA:   3'- -GGGG----------UCUgUGGAuUGGGCUCGCgCCC- -5'
23586 5' -58.5 NC_005261.1 + 128612 0.74 0.384295
Target:  5'- cCCCCAccccCGCCUGcccaccccggGCCCGAG-GCGGGg -3'
miRNA:   3'- -GGGGUcu--GUGGAU----------UGGGCUCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 128209 0.7 0.624744
Target:  5'- gCCCCcGACGCgaGGCCCGcccggucggguGGCaaGCGGGu -3'
miRNA:   3'- -GGGGuCUGUGgaUUGGGC-----------UCG--CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 127967 0.69 0.654595
Target:  5'- uCCUCAGggcagaagGCGCCaGGCCCGcggcggcgaguGCGCGGGc -3'
miRNA:   3'- -GGGGUC--------UGUGGaUUGGGCu----------CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 127888 0.66 0.839008
Target:  5'- gCgCCGG-CGCCcgucgGGCCCGGGCcUGGGc -3'
miRNA:   3'- -GgGGUCuGUGGa----UUGGGCUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 127773 0.67 0.761076
Target:  5'- gCgaAGACGCCcggcuGCUCGAGCgGCGGGc -3'
miRNA:   3'- gGggUCUGUGGau---UGGGCUCG-CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 127695 0.66 0.834202
Target:  5'- gCCCCGGcgGCGCCggagGagcugcgcguggccuGCCUGGuaGCGGGa -3'
miRNA:   3'- -GGGGUC--UGUGGa---U---------------UGGGCUcgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 127323 0.69 0.674423
Target:  5'- gCCCuGcCGCCcgcgggGGCCgGAGCGgCGGGg -3'
miRNA:   3'- gGGGuCuGUGGa-----UUGGgCUCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 127249 0.69 0.654595
Target:  5'- -aCCAG-CGCC--AgUCGGGCGCGGGg -3'
miRNA:   3'- ggGGUCuGUGGauUgGGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 127163 0.74 0.384295
Target:  5'- uCCCUAGACgcgcuggcggcGCCUGggcggcGCCCGAGUGCcgccGGGg -3'
miRNA:   3'- -GGGGUCUG-----------UGGAU------UGGGCUCGCG----CCC- -5'
23586 5' -58.5 NC_005261.1 + 127014 0.66 0.805832
Target:  5'- gCCgCAGGCGgC-GGCCCGAGCa-GGGa -3'
miRNA:   3'- -GGgGUCUGUgGaUUGGGCUCGcgCCC- -5'
23586 5' -58.5 NC_005261.1 + 126932 0.71 0.55559
Target:  5'- uUCCAGcaGCgcgGCCaggGGCgCCGGGCGCGGGg -3'
miRNA:   3'- gGGGUC--UG---UGGa--UUG-GGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 125661 0.74 0.392431
Target:  5'- gCCCCucucGGCcCCgcguuGCCCG-GCGCGGGg -3'
miRNA:   3'- -GGGGu---CUGuGGau---UGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 125598 0.68 0.722315
Target:  5'- gCCCCAGACcgcGCCggacuACaCCGugguggcGGCGCGGc -3'
miRNA:   3'- -GGGGUCUG---UGGau---UG-GGC-------UCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 125296 0.7 0.624744
Target:  5'- gCCgCGGGCGCCgGACCCGcgGGCGCu-- -3'
miRNA:   3'- -GGgGUCUGUGGaUUGGGC--UCGCGccc -5'
23586 5' -58.5 NC_005261.1 + 125198 0.69 0.644652
Target:  5'- gCCCCGcGC-CCUGGCUCGuGGUGCuGGGg -3'
miRNA:   3'- -GGGGUcUGuGGAUUGGGC-UCGCG-CCC- -5'
23586 5' -58.5 NC_005261.1 + 124953 0.66 0.805832
Target:  5'- -gCCGG-CGCCcuggAGCCCGcacucaaaucGCGCGGGg -3'
miRNA:   3'- ggGGUCuGUGGa---UUGGGCu---------CGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.