Results 21 - 40 of 499 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23586 | 5' | -58.5 | NC_005261.1 | + | 29886 | 0.66 | 0.822748 |
Target: 5'- gCCgCCAG-CGCCcgGGCCCGcggcAGCGCGcGa -3' miRNA: 3'- -GG-GGUCuGUGGa-UUGGGC----UCGCGC-Cc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 25456 | 0.66 | 0.822748 |
Target: 5'- aUCCAGAC-CC-AGCCgGGGCuugaGUGGGa -3' miRNA: 3'- gGGGUCUGuGGaUUGGgCUCG----CGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 127695 | 0.66 | 0.834202 |
Target: 5'- gCCCCGGcgGCGCCggagGagcugcgcguggccuGCCUGGuaGCGGGa -3' miRNA: 3'- -GGGGUC--UGUGGa---U---------------UGGGCUcgCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 72846 | 0.66 | 0.839008 |
Target: 5'- gCCaGGGCGCCagcGCCCaGGCGUGGa -3' miRNA: 3'- gGGgUCUGUGGau-UGGGcUCGCGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 47534 | 0.66 | 0.814368 |
Target: 5'- aCUC-GACGgCguuCCCGGGCGCGGc -3' miRNA: 3'- gGGGuCUGUgGauuGGGCUCGCGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 3817 | 0.66 | 0.822748 |
Target: 5'- gCUCGcGCGCUgccgcgGGCCCGGGCGCuGGc -3' miRNA: 3'- gGGGUcUGUGGa-----UUGGGCUCGCGcCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 58777 | 0.66 | 0.822748 |
Target: 5'- cCCCCAGcGCGCC-GGCCagCGcGCGCaGGa -3' miRNA: 3'- -GGGGUC-UGUGGaUUGG--GCuCGCGcCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 84845 | 0.66 | 0.839008 |
Target: 5'- gCCCAG-CACC--ACCgCGGGcCGCGuGGc -3' miRNA: 3'- gGGGUCuGUGGauUGG-GCUC-GCGC-CC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 4988 | 0.66 | 0.822748 |
Target: 5'- gCCCggaGGGCGCCgaggccCCCGGGCccccCGGGu -3' miRNA: 3'- -GGGg--UCUGUGGauu---GGGCUCGc---GCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 127888 | 0.66 | 0.839008 |
Target: 5'- gCgCCGG-CGCCcgucgGGCCCGGGCcUGGGc -3' miRNA: 3'- -GgGGUCuGUGGa----UUGGGCUCGcGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 46278 | 0.66 | 0.822748 |
Target: 5'- cCCCgGGGCGCuCUGGCCgGgcaacGGCGCGc- -3' miRNA: 3'- -GGGgUCUGUG-GAUUGGgC-----UCGCGCcc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 17154 | 0.66 | 0.822748 |
Target: 5'- aCgUAGAC-CgUcACCCGcGGCGCGGGc -3' miRNA: 3'- gGgGUCUGuGgAuUGGGC-UCGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 5264 | 0.66 | 0.830963 |
Target: 5'- gCCCgccgggAGACGCCaUGGCCgGccgcggugcGCGCGGGu -3' miRNA: 3'- gGGG------UCUGUGG-AUUGGgCu--------CGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 30288 | 0.66 | 0.830963 |
Target: 5'- gCCUGGACG-CUGGCCCGcGCGCu-- -3' miRNA: 3'- gGGGUCUGUgGAUUGGGCuCGCGccc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 28225 | 0.66 | 0.839008 |
Target: 5'- gCCCCAGcUACCc--CCCGGcGCGCGcGa -3' miRNA: 3'- -GGGGUCuGUGGauuGGGCU-CGCGC-Cc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 137675 | 0.66 | 0.839008 |
Target: 5'- aCCCCGGGgcccccCACCgcccCUCGuGCaGCGGGc -3' miRNA: 3'- -GGGGUCU------GUGGauu-GGGCuCG-CGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 97560 | 0.66 | 0.805832 |
Target: 5'- gCCCGucCGCCcgggguUGGCUCGguGGCGCGGGc -3' miRNA: 3'- gGGGUcuGUGG------AUUGGGC--UCGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 115260 | 0.66 | 0.814368 |
Target: 5'- gCUCCAGcACGCCgccgcgcgUCUGGGaCGCGGGc -3' miRNA: 3'- -GGGGUC-UGUGGauu-----GGGCUC-GCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 39394 | 0.66 | 0.814368 |
Target: 5'- gCCCuGGCGgC-GACCCGAGCcccaGCGGc -3' miRNA: 3'- gGGGuCUGUgGaUUGGGCUCG----CGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 79030 | 0.66 | 0.820251 |
Target: 5'- gCCCgGGGCGCCcgcGCCCuuggcgucguccuuGAGCGCGc- -3' miRNA: 3'- -GGGgUCUGUGGau-UGGG--------------CUCGCGCcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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