Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 46451 | 0.66 | 0.92694 |
Target: 5'- aCGGCGUGCGUGaACAggccCUCGaagcgCAGg -3' miRNA: 3'- cGCCGCACGUACaUGUac--GAGCg----GUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 72468 | 0.66 | 0.92694 |
Target: 5'- cGCGGCGaGCGcGaGCGcgGCcagCGCCAGg -3' miRNA: 3'- -CGCCGCaCGUaCaUGUa-CGa--GCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 19800 | 0.66 | 0.92694 |
Target: 5'- cGCGGCG-GCGUccGCGgcgGCgacaGCCAGc -3' miRNA: 3'- -CGCCGCaCGUAcaUGUa--CGag--CGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 45623 | 0.66 | 0.92694 |
Target: 5'- cGCGGCGcgGCGcg-GCggGCccgCGCCGGa -3' miRNA: 3'- -CGCCGCa-CGUacaUGuaCGa--GCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 80684 | 0.66 | 0.92694 |
Target: 5'- gGC-GCGUGCgacGUGUGCccGUGCgccgCGCCGu -3' miRNA: 3'- -CGcCGCACG---UACAUG--UACGa---GCGGUc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 23773 | 0.66 | 0.921398 |
Target: 5'- -gGGCGgGCcgGcUAgGguggGCUCGCCGGg -3' miRNA: 3'- cgCCGCaCGuaC-AUgUa---CGAGCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 128347 | 0.66 | 0.921398 |
Target: 5'- -gGGCGgGCcgGcUAgGguggGCUCGCCGGg -3' miRNA: 3'- cgCCGCaCGuaC-AUgUa---CGAGCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 128290 | 0.66 | 0.921398 |
Target: 5'- -gGGCGgGCcgGcUAgGguggGCUCGCCGGg -3' miRNA: 3'- cgCCGCaCGuaC-AUgUa---CGAGCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 101997 | 0.66 | 0.921398 |
Target: 5'- aCGGCGUcGUAgugGcGCA-GCUCGCCGc -3' miRNA: 3'- cGCCGCA-CGUa--CaUGUaCGAGCGGUc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 23830 | 0.66 | 0.921398 |
Target: 5'- -gGGCGgGCcgGcUAgGguggGCUCGCCGGg -3' miRNA: 3'- cgCCGCaCGuaC-AUgUa---CGAGCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 12770 | 0.66 | 0.921398 |
Target: 5'- gGCGGCGgugGCggGgg---GCUCGUCGGc -3' miRNA: 3'- -CGCCGCa--CGuaCauguaCGAGCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 101473 | 0.66 | 0.915608 |
Target: 5'- cCGGCGUGCAgggGCGccaGCUgGCCuGg -3' miRNA: 3'- cGCCGCACGUacaUGUa--CGAgCGGuC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 72025 | 0.66 | 0.915608 |
Target: 5'- gGCGGCGUGC-UGgc---GCUgGCCGa -3' miRNA: 3'- -CGCCGCACGuACauguaCGAgCGGUc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 93773 | 0.66 | 0.915608 |
Target: 5'- cGCGGCGUcGCAgcagGUGCccccgGgaCGCCGc -3' miRNA: 3'- -CGCCGCA-CGUa---CAUGua---CgaGCGGUc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 14961 | 0.66 | 0.915608 |
Target: 5'- aGCgGGCGUGCcUGggGCGacUGCgcggccgCGCCGGc -3' miRNA: 3'- -CG-CCGCACGuACa-UGU--ACGa------GCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 80629 | 0.66 | 0.915016 |
Target: 5'- cGCGGCGUGCGccgccagGUggcACAUcgacgcgcucaacGCggCGCCGGa -3' miRNA: 3'- -CGCCGCACGUa------CA---UGUA-------------CGa-GCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 74159 | 0.66 | 0.913823 |
Target: 5'- aGCGG-G-GCAUGcGCGUGCUCaaggugacgcgccuGCCGGc -3' miRNA: 3'- -CGCCgCaCGUACaUGUACGAG--------------CGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 14662 | 0.66 | 0.913823 |
Target: 5'- aGCGGUGUacgggggccgGCGUGUgacggugcgcgaggGCAcGCUCGCgCGGu -3' miRNA: 3'- -CGCCGCA----------CGUACA--------------UGUaCGAGCG-GUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 54068 | 0.66 | 0.910186 |
Target: 5'- cGCGGCGgcggugguggcagggGCGUGgcCGagGCcCGCCAGc -3' miRNA: 3'- -CGCCGCa--------------CGUACauGUa-CGaGCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 82992 | 0.66 | 0.909571 |
Target: 5'- cGCGGCGgcUGCG-GUGC-UGCcgcccUCGCCGc -3' miRNA: 3'- -CGCCGC--ACGUaCAUGuACG-----AGCGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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