miRNA display CGI


Results 1 - 20 of 607 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23590 5' -60.4 NC_005261.1 + 41154 0.66 0.737981
Target:  5'- cGCCgguagGCUUCGuccaCGCGGcCCGgGUCCAGg -3'
miRNA:   3'- -CGG-----UGAGGUg---GCGCC-GGUgCAGGUCg -5'
23590 5' -60.4 NC_005261.1 + 7658 0.66 0.737981
Target:  5'- uUCGCUUCaagcgGCCGCGGCCGcCG-CCuGUg -3'
miRNA:   3'- cGGUGAGG-----UGGCGCCGGU-GCaGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 32668 0.66 0.737981
Target:  5'- cGCCGCUaacgCCGCCGCccGCCGCccUCC-GCa -3'
miRNA:   3'- -CGGUGA----GGUGGCGc-CGGUGc-AGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 55854 0.66 0.737981
Target:  5'- uCCGCgCCGgCGCGGaCCAaGUCCAcgacGCg -3'
miRNA:   3'- cGGUGaGGUgGCGCC-GGUgCAGGU----CG- -5'
23590 5' -60.4 NC_005261.1 + 97916 0.66 0.737981
Target:  5'- cGCCggGCguccCCGCUGUacuGGCCGCcagcUCCGGCg -3'
miRNA:   3'- -CGG--UGa---GGUGGCG---CCGGUGc---AGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 118436 0.66 0.737981
Target:  5'- cGCCGCggacgCCGCCGCGGCgcuagaagaCACuugCCAu- -3'
miRNA:   3'- -CGGUGa----GGUGGCGCCG---------GUGca-GGUcg -5'
23590 5' -60.4 NC_005261.1 + 107834 0.66 0.734184
Target:  5'- cGCCGCcucugcccggucgCCGCCGCcGCCcuCG-CCGGCc -3'
miRNA:   3'- -CGGUGa------------GGUGGCGcCGGu-GCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 14353 0.66 0.728462
Target:  5'- aGCgGCagCAgCCGCGGCCGgGg-CGGCg -3'
miRNA:   3'- -CGgUGagGU-GGCGCCGGUgCagGUCG- -5'
23590 5' -60.4 NC_005261.1 + 66758 0.66 0.728462
Target:  5'- gGCUGgUCCACCggguGUGGCC-CGUCgCGcGCg -3'
miRNA:   3'- -CGGUgAGGUGG----CGCCGGuGCAG-GU-CG- -5'
23590 5' -60.4 NC_005261.1 + 38463 0.66 0.728462
Target:  5'- gGCCAacgcgUUCCuggagcagcacgGCCGCGGCgGCGUCgacuggAGCg -3'
miRNA:   3'- -CGGU-----GAGG------------UGGCGCCGgUGCAGg-----UCG- -5'
23590 5' -60.4 NC_005261.1 + 59782 0.66 0.728462
Target:  5'- gGCCGCagCgACgGCGGCgGgCGgcaggCCGGCg -3'
miRNA:   3'- -CGGUGa-GgUGgCGCCGgU-GCa----GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 118839 0.66 0.728462
Target:  5'- uGCCGCUCUGCgGCgcggagGGCgGCGcgCCcGCg -3'
miRNA:   3'- -CGGUGAGGUGgCG------CCGgUGCa-GGuCG- -5'
23590 5' -60.4 NC_005261.1 + 124234 0.66 0.728462
Target:  5'- aGCCcaACcgCCGCCGCGGgCAgGcgCCGcGCg -3'
miRNA:   3'- -CGG--UGa-GGUGGCGCCgGUgCa-GGU-CG- -5'
23590 5' -60.4 NC_005261.1 + 130303 0.66 0.728462
Target:  5'- aGCCACccaaccagCCGCUGCaGcGCCAUGgacggcCCGGCc -3'
miRNA:   3'- -CGGUGa-------GGUGGCG-C-CGGUGCa-----GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 134870 0.66 0.728462
Target:  5'- cCCGCgCCcCCGCgGGCCccugcuguGCGUUCGGUg -3'
miRNA:   3'- cGGUGaGGuGGCG-CCGG--------UGCAGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 67420 0.66 0.728462
Target:  5'- cGCCAgCagCGCcCGCGGCCAgCGcCCAaaggGCa -3'
miRNA:   3'- -CGGU-GagGUG-GCGCCGGU-GCaGGU----CG- -5'
23590 5' -60.4 NC_005261.1 + 10569 0.66 0.727506
Target:  5'- cCCACUCUuugggGCCgaaugcgacgugaGCGGCaGCGacUCCAGCa -3'
miRNA:   3'- cGGUGAGG-----UGG-------------CGCCGgUGC--AGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 27482 0.66 0.725591
Target:  5'- gGCC-CUCCccgggcgcaccuggACCGCcaGGUCugGgcgggCCAGCu -3'
miRNA:   3'- -CGGuGAGG--------------UGGCG--CCGGugCa----GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 4486 0.66 0.722712
Target:  5'- cGCCGCggcguagCCugCGCGGgccccagucgcgcgcCCGCG-CgGGCg -3'
miRNA:   3'- -CGGUGa------GGugGCGCC---------------GGUGCaGgUCG- -5'
23590 5' -60.4 NC_005261.1 + 74954 0.66 0.718865
Target:  5'- gGCgCGCUCgGCgCGCucgaGGCCGCGcgCCcGCg -3'
miRNA:   3'- -CG-GUGAGgUG-GCG----CCGGUGCa-GGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.