miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23592 5' -59.7 NC_005261.1 + 118224 0.65 0.738344
Target:  5'- gCGCUGAcgGCCgCG-GCCGCggccuacgccgucuGCGGcGUGCc -3'
miRNA:   3'- -GCGACUa-CGG-GCaCGGCG--------------CGUC-CAUG- -5'
23592 5' -59.7 NC_005261.1 + 29426 0.66 0.73157
Target:  5'- cCGC-GggGCCCGcgGCCGUGUucGUGCc -3'
miRNA:   3'- -GCGaCuaCGGGCa-CGGCGCGucCAUG- -5'
23592 5' -59.7 NC_005261.1 + 19249 0.66 0.73157
Target:  5'- uGCgGggGCgCUGaacaGCgCGCGCGGGUACg -3'
miRNA:   3'- gCGaCuaCG-GGCa---CG-GCGCGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 74691 0.66 0.73157
Target:  5'- gCGCgGGaGCUgGccGCCGCGCGGGcGCg -3'
miRNA:   3'- -GCGaCUaCGGgCa-CGGCGCGUCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 19403 0.66 0.721824
Target:  5'- uCGgUGAUcgGCCCGUguGCCGCGCcgaagucgcccAGGcACa -3'
miRNA:   3'- -GCgACUA--CGGGCA--CGGCGCG-----------UCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 29944 0.66 0.721824
Target:  5'- gCGCUGcgGCC--UGCCGCG-AGGcGCu -3'
miRNA:   3'- -GCGACuaCGGgcACGGCGCgUCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 46457 0.66 0.721824
Target:  5'- uGCgUGAacagGCCCucGaaGCGCAGGUGCa -3'
miRNA:   3'- gCG-ACUa---CGGGcaCggCGCGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 12123 0.66 0.721824
Target:  5'- gCGCcagGAUggcGCCCGccgccgcggcgGCCGCGCAGGc-- -3'
miRNA:   3'- -GCGa--CUA---CGGGCa----------CGGCGCGUCCaug -5'
23592 5' -59.7 NC_005261.1 + 29641 0.66 0.720845
Target:  5'- cCGCUGccGCCgGUcggggacgccaugGCCGCGCAGa--- -3'
miRNA:   3'- -GCGACuaCGGgCA-------------CGGCGCGUCcaug -5'
23592 5' -59.7 NC_005261.1 + 20727 0.66 0.720845
Target:  5'- gCGCUGggGCUCG-GCCGUuucacguGUGGGUGu -3'
miRNA:   3'- -GCGACuaCGGGCaCGGCG-------CGUCCAUg -5'
23592 5' -59.7 NC_005261.1 + 81176 0.66 0.712002
Target:  5'- gCGCccGA-GCUCGUacucggggcacgGCCGCGCGGGcGCg -3'
miRNA:   3'- -GCGa-CUaCGGGCA------------CGGCGCGUCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 80943 0.66 0.712002
Target:  5'- ------cGCCC--GCUGCGCAGGUACu -3'
miRNA:   3'- gcgacuaCGGGcaCGGCGCGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 97230 0.66 0.711016
Target:  5'- gCGCUGGcgccgGCCCG-GCCGgcuggguCGCGGGg-- -3'
miRNA:   3'- -GCGACUa----CGGGCaCGGC-------GCGUCCaug -5'
23592 5' -59.7 NC_005261.1 + 83391 0.66 0.702113
Target:  5'- aGC-GcgGCCuCG-GCCGaggcgaGCAGGUGCg -3'
miRNA:   3'- gCGaCuaCGG-GCaCGGCg-----CGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 79403 0.66 0.700128
Target:  5'- uCGCUGuagucgagcagGCCCGUGUcggcgagcucggCGCGCGuGUACa -3'
miRNA:   3'- -GCGACua---------CGGGCACG------------GCGCGUcCAUG- -5'
23592 5' -59.7 NC_005261.1 + 30774 0.66 0.692167
Target:  5'- gGCcGGaGCCCG-GCCGCgGCgguggAGGUGCu -3'
miRNA:   3'- gCGaCUaCGGGCaCGGCG-CG-----UCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 125044 0.66 0.692167
Target:  5'- gCGCUGAcucgggcaggGCCUcuaUGgCGCGCAGGUGg -3'
miRNA:   3'- -GCGACUa---------CGGGc--ACgGCGCGUCCAUg -5'
23592 5' -59.7 NC_005261.1 + 13643 0.66 0.692167
Target:  5'- aCGCgGAagcgcGCgCCGUGCCGCcgccGCGGGggggGCg -3'
miRNA:   3'- -GCGaCUa----CG-GGCACGGCG----CGUCCa---UG- -5'
23592 5' -59.7 NC_005261.1 + 76003 0.66 0.692167
Target:  5'- gCGCUGGacGCCCuggcGCCGCGCAGcGccGCg -3'
miRNA:   3'- -GCGACUa-CGGGca--CGGCGCGUC-Ca-UG- -5'
23592 5' -59.7 NC_005261.1 + 106811 0.67 0.682172
Target:  5'- gCGCcGAgugGCCCGccaGCaGCGCGuGGUGCg -3'
miRNA:   3'- -GCGaCUa--CGGGCa--CGgCGCGU-CCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.