miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23594 3' -58.9 NC_005261.1 + 13941 0.66 0.793167
Target:  5'- uCGCGUUgcGGCCcagCcGCGCGGAaacGCGCGGu -3'
miRNA:   3'- -GUGCGA--CCGGa--GcUGCGUCU---CGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 44310 0.66 0.793167
Target:  5'- -cCGCUGcccgcgggcGCCgcaGACGgGGGGCugGGg -3'
miRNA:   3'- guGCGAC---------CGGag-CUGCgUCUCGugCC- -5'
23594 3' -58.9 NC_005261.1 + 82160 0.66 0.793167
Target:  5'- cCGCGCcaGCaagcgCGGCGCGGAagGCGCGGc -3'
miRNA:   3'- -GUGCGacCGga---GCUGCGUCU--CGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 118983 0.66 0.793167
Target:  5'- cCGCGCUGuGCUUCuGCGuCGGGGCcuGCuGGg -3'
miRNA:   3'- -GUGCGAC-CGGAGcUGC-GUCUCG--UG-CC- -5'
23594 3' -58.9 NC_005261.1 + 135010 0.66 0.793167
Target:  5'- gGCGCggcgGGCC-CGcACGCGGc-CGCGGc -3'
miRNA:   3'- gUGCGa---CCGGaGC-UGCGUCucGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 38296 0.66 0.792275
Target:  5'- -gUGCUGGCC-CGccugagcGCGCAGGGCGg-- -3'
miRNA:   3'- guGCGACCGGaGC-------UGCGUCUCGUgcc -5'
23594 3' -58.9 NC_005261.1 + 1448 0.66 0.784192
Target:  5'- aGCgGCgGcGCCUCGGCGUgcggcuccAGcAGCGCGGc -3'
miRNA:   3'- gUG-CGaC-CGGAGCUGCG--------UC-UCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 4960 0.66 0.784192
Target:  5'- gGCGCccccGGCCgCGGCGUccucuGGGGCcCGGa -3'
miRNA:   3'- gUGCGa---CCGGaGCUGCG-----UCUCGuGCC- -5'
23594 3' -58.9 NC_005261.1 + 45943 0.66 0.784192
Target:  5'- gCGCGCgagGGCCgccagGGCGCcguuGAGCAUGc -3'
miRNA:   3'- -GUGCGa--CCGGag---CUGCGu---CUCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 59549 0.66 0.784192
Target:  5'- gCGCGCgGGCUucuaaUCGGCGCGcGcGCGCGc -3'
miRNA:   3'- -GUGCGaCCGG-----AGCUGCGU-CuCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 70649 0.66 0.784192
Target:  5'- gGCGCUGaGgUUCGGCGCcGcGGcCGCGGg -3'
miRNA:   3'- gUGCGAC-CgGAGCUGCGuC-UC-GUGCC- -5'
23594 3' -58.9 NC_005261.1 + 74517 0.66 0.784192
Target:  5'- gGCGCcggGGCCaUGGCGCuuGGGCGCc- -3'
miRNA:   3'- gUGCGa--CCGGaGCUGCGu-CUCGUGcc -5'
23594 3' -58.9 NC_005261.1 + 74879 0.66 0.784192
Target:  5'- gACGC-GGCggCGGCgGCGGAGUcgGCGGc -3'
miRNA:   3'- gUGCGaCCGgaGCUG-CGUCUCG--UGCC- -5'
23594 3' -58.9 NC_005261.1 + 76001 0.66 0.784192
Target:  5'- uCGCGCUGGacgcCCUgGcgccGCGCAGcGcCGCGGg -3'
miRNA:   3'- -GUGCGACC----GGAgC----UGCGUCuC-GUGCC- -5'
23594 3' -58.9 NC_005261.1 + 52229 0.66 0.784192
Target:  5'- gGCGCUgcGGCCgguacgguuUCGugGgAGGGCGCu- -3'
miRNA:   3'- gUGCGA--CCGG---------AGCugCgUCUCGUGcc -5'
23594 3' -58.9 NC_005261.1 + 104055 0.66 0.784192
Target:  5'- -cCGCaGcGCCUCGGcCGC-GAGCGCGu -3'
miRNA:   3'- guGCGaC-CGGAGCU-GCGuCUCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 132501 0.66 0.784192
Target:  5'- aCGCGCccGaCCgCGACGCGG-GCugGGa -3'
miRNA:   3'- -GUGCGa-CcGGaGCUGCGUCuCGugCC- -5'
23594 3' -58.9 NC_005261.1 + 136993 0.66 0.784192
Target:  5'- cCugGCaGGUCgaucgugCGGcCGgAGAGCGCGGc -3'
miRNA:   3'- -GugCGaCCGGa------GCU-GCgUCUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 57448 0.66 0.784192
Target:  5'- cCGCGCgacGGCgUCcGCGaAGAGCACGcGg -3'
miRNA:   3'- -GUGCGa--CCGgAGcUGCgUCUCGUGC-C- -5'
23594 3' -58.9 NC_005261.1 + 56619 0.66 0.780565
Target:  5'- gCGCGCgugGaGCCccccagcgaccaGACGCGGGGCGCGc -3'
miRNA:   3'- -GUGCGa--C-CGGag----------CUGCGUCUCGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.