miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 5' -55.5 NC_005261.1 + 83384 0.66 0.928112
Target:  5'- cGCGGCGAgcgCg---GCCuCGGCcgaggcgaGCAGGUg -3'
miRNA:   3'- -CGCUGCUa--GaacaUGG-GCCG--------CGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 74449 0.66 0.928112
Target:  5'- cCGGCGGggg-GUGggggcgccgccCCCGGCGC-GGCg -3'
miRNA:   3'- cGCUGCUagaaCAU-----------GGGCCGCGuCCG- -5'
23598 5' -55.5 NC_005261.1 + 98167 0.66 0.928112
Target:  5'- gGCGGCGGgugugucCUUGgagccGCCgGGgGCGcGGCg -3'
miRNA:   3'- -CGCUGCUa------GAACa----UGGgCCgCGU-CCG- -5'
23598 5' -55.5 NC_005261.1 + 81175 0.66 0.928112
Target:  5'- uGCGccCGAgCUcGUACUCGGgGCAcGGCc -3'
miRNA:   3'- -CGCu-GCUaGAaCAUGGGCCgCGU-CCG- -5'
23598 5' -55.5 NC_005261.1 + 100323 0.66 0.928112
Target:  5'- cGCGcuCGAUCU----CCaGGCGCAGGUu -3'
miRNA:   3'- -CGCu-GCUAGAacauGGgCCGCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 46778 0.66 0.928112
Target:  5'- aGCGAgGG-CUUGaGCCCcgGGCGCccgucgcGGCg -3'
miRNA:   3'- -CGCUgCUaGAACaUGGG--CCGCGu------CCG- -5'
23598 5' -55.5 NC_005261.1 + 39267 0.66 0.927584
Target:  5'- aGCGA-GGUCUUcGgggagGCCCGGguggccaCGguGGCg -3'
miRNA:   3'- -CGCUgCUAGAA-Ca----UGGGCC-------GCguCCG- -5'
23598 5' -55.5 NC_005261.1 + 43433 0.66 0.922726
Target:  5'- cCGGCGGggagCUg--GCUCGGCGCcuggacgucgccGGGCg -3'
miRNA:   3'- cGCUGCUa---GAacaUGGGCCGCG------------UCCG- -5'
23598 5' -55.5 NC_005261.1 + 46258 0.66 0.922726
Target:  5'- gGCGGCGGccgCgaccgUGUcCCCGGgGCgcucuggccGGGCa -3'
miRNA:   3'- -CGCUGCUa--Ga----ACAuGGGCCgCG---------UCCG- -5'
23598 5' -55.5 NC_005261.1 + 29466 0.66 0.922726
Target:  5'- cGCGGgGAagcaGUACgCGGCGCuGGUg -3'
miRNA:   3'- -CGCUgCUagaaCAUGgGCCGCGuCCG- -5'
23598 5' -55.5 NC_005261.1 + 31795 0.66 0.922726
Target:  5'- cGCGGCGca---GUGCgCCGcGCGCuGGCc -3'
miRNA:   3'- -CGCUGCuagaaCAUG-GGC-CGCGuCCG- -5'
23598 5' -55.5 NC_005261.1 + 69273 0.66 0.917102
Target:  5'- cCGGCGAgccgcccgCgccgacCCCGGCGCGGGg -3'
miRNA:   3'- cGCUGCUa-------Gaacau-GGGCCGCGUCCg -5'
23598 5' -55.5 NC_005261.1 + 44024 0.66 0.917102
Target:  5'- cGCGGCGggCg---GCCgccgcgcggCGGcCGCGGGCg -3'
miRNA:   3'- -CGCUGCuaGaacaUGG---------GCC-GCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 17294 0.66 0.917102
Target:  5'- cCGACGAggCUauaUACCCGGC-CGGGg -3'
miRNA:   3'- cGCUGCUa-GAac-AUGGGCCGcGUCCg -5'
23598 5' -55.5 NC_005261.1 + 87488 0.66 0.917102
Target:  5'- uCGGCGcggccGUGCUgGcGCGCAGGCg -3'
miRNA:   3'- cGCUGCuagaaCAUGGgC-CGCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 97969 0.66 0.914785
Target:  5'- gGCGGCGGagcgGUGCCCGGgGagagugaagugggAGGCg -3'
miRNA:   3'- -CGCUGCUagaaCAUGGGCCgCg------------UCCG- -5'
23598 5' -55.5 NC_005261.1 + 109856 0.66 0.911239
Target:  5'- gGUGGCGGcUCcUGggggcagcgggGCCCGcGgGCGGGCg -3'
miRNA:   3'- -CGCUGCU-AGaACa----------UGGGC-CgCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 102444 0.66 0.911239
Target:  5'- uCGGCGcgCc---GCCCGGCcucggcgcGCAGGCg -3'
miRNA:   3'- cGCUGCuaGaacaUGGGCCG--------CGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 29512 0.66 0.911239
Target:  5'- cGCGACGccaug--GCCUGGCuGCAGaGCg -3'
miRNA:   3'- -CGCUGCuagaacaUGGGCCG-CGUC-CG- -5'
23598 5' -55.5 NC_005261.1 + 20856 0.66 0.911239
Target:  5'- cGUGGCGGcUCUUGcGCCgCGG-GCcGGCc -3'
miRNA:   3'- -CGCUGCU-AGAACaUGG-GCCgCGuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.