miRNA display CGI


Results 1 - 20 of 758 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23602 3' -65.1 NC_005261.1 + 63751 0.66 0.510397
Target:  5'- -gGCGGCGuaggccgccguguaGCCcacgccgagguccacGuGCGCGCGCgGCUGCg -3'
miRNA:   3'- gaCGCCGC--------------CGG---------------C-CGCGCGCGaUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 82645 0.66 0.510397
Target:  5'- aUGUGGUGGUCGuaGCaCGCGCggaugagcgccucgaGCCGCu -3'
miRNA:   3'- gACGCCGCCGGC--CGcGCGCGa--------------UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 5447 0.66 0.509478
Target:  5'- -gGCGGCGGCaacaGCGCccccccgagcaGCccccGCUAUCGCg -3'
miRNA:   3'- gaCGCCGCCGgc--CGCG-----------CG----CGAUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 64881 0.66 0.509478
Target:  5'- -aGCGGCGGCgGGaGCGC-CggguCCaGCa -3'
miRNA:   3'- gaCGCCGCCGgCCgCGCGcGau--GG-CG- -5'
23602 3' -65.1 NC_005261.1 + 98772 0.66 0.509478
Target:  5'- gCUGCcGCcGCCGGC-CGC-CgGCCGCg -3'
miRNA:   3'- -GACGcCGcCGGCCGcGCGcGaUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 111349 0.66 0.509478
Target:  5'- -aGcCGGC-GCCGacCGCGCGuCUGCUGCc -3'
miRNA:   3'- gaC-GCCGcCGGCc-GCGCGC-GAUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 31441 0.66 0.509478
Target:  5'- -gGCGGCGccgcCCGGCGaggacgaGCGCcgGCgGCc -3'
miRNA:   3'- gaCGCCGCc---GGCCGCg------CGCGa-UGgCG- -5'
23602 3' -65.1 NC_005261.1 + 86260 0.66 0.509478
Target:  5'- gUGCGcgcacGCGuGCCGGuCGuCGCGCgagcacagcCCGCa -3'
miRNA:   3'- gACGC-----CGC-CGGCC-GC-GCGCGau-------GGCG- -5'
23602 3' -65.1 NC_005261.1 + 88469 0.66 0.509478
Target:  5'- gUGUgGGCgGGCCGuGC-CGCGCcggagcgcGCCGCg -3'
miRNA:   3'- gACG-CCG-CCGGC-CGcGCGCGa-------UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 128841 0.66 0.509478
Target:  5'- -cGCGGCuGGCCgccacGGUGCcccgccucGuCGCUGCCGa -3'
miRNA:   3'- gaCGCCG-CCGG-----CCGCG--------C-GCGAUGGCg -5'
23602 3' -65.1 NC_005261.1 + 131723 0.66 0.509478
Target:  5'- -gGCGGCGcGCuuCGGUGgGUGCUGCa-- -3'
miRNA:   3'- gaCGCCGC-CG--GCCGCgCGCGAUGgcg -5'
23602 3' -65.1 NC_005261.1 + 31019 0.66 0.509478
Target:  5'- --cCGGC-GCCGGCcaaaagccgGCGCGCcGCCGg -3'
miRNA:   3'- gacGCCGcCGGCCG---------CGCGCGaUGGCg -5'
23602 3' -65.1 NC_005261.1 + 100042 0.66 0.509478
Target:  5'- -cGCgGGCGucaGCuCGaGCGCGcCGCcGCCGCc -3'
miRNA:   3'- gaCG-CCGC---CG-GC-CGCGC-GCGaUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 101528 0.66 0.509478
Target:  5'- -cGUcGCGGUCGcGCGC-CGCcucgGCCGCc -3'
miRNA:   3'- gaCGcCGCCGGC-CGCGcGCGa---UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 56006 0.66 0.508559
Target:  5'- -gGCGGgGGCgGGgGCGgggaagaCGCaAUCGCg -3'
miRNA:   3'- gaCGCCgCCGgCCgCGC-------GCGaUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 104463 0.66 0.503976
Target:  5'- -gGCGGCGccguccaccucGCCcuccagcucguccacGGCGuCGUGCaGCCGCu -3'
miRNA:   3'- gaCGCCGC-----------CGG---------------CCGC-GCGCGaUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 3926 0.66 0.503976
Target:  5'- -gGCGcCGGCCuccggguaggccaugGGCGCguacGCGC-GCCGCa -3'
miRNA:   3'- gaCGCcGCCGG---------------CCGCG----CGCGaUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 135098 0.66 0.500323
Target:  5'- --cCGGCGGCgGaGCGCGagGCggaccCCGCg -3'
miRNA:   3'- gacGCCGCCGgC-CGCGCg-CGau---GGCG- -5'
23602 3' -65.1 NC_005261.1 + 109036 0.66 0.500323
Target:  5'- -cGUGGCGcGCa-GC-CGCGCgGCCGCc -3'
miRNA:   3'- gaCGCCGC-CGgcCGcGCGCGaUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 75810 0.66 0.500323
Target:  5'- --uCGGCacGCUGGUGCccgGCGCgGCCGCg -3'
miRNA:   3'- gacGCCGc-CGGCCGCG---CGCGaUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.