miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23602 5' -54.8 NC_005261.1 + 106413 0.66 0.952754
Target:  5'- -cGCGGCGcuGCAgCGGGCcgCGGUCcaCGc -3'
miRNA:   3'- gaUGCCGC--UGU-GCCUGa-GCCAGaaGC- -5'
23602 5' -54.8 NC_005261.1 + 32744 0.66 0.952754
Target:  5'- uCUGCGcGCGGCccgccgcucuACGGGCUCGGa----- -3'
miRNA:   3'- -GAUGC-CGCUG----------UGCCUGAGCCagaagc -5'
23602 5' -54.8 NC_005261.1 + 12358 0.66 0.952754
Target:  5'- -cGCGGCGGCAacCGG---CGcGUCUUCGa -3'
miRNA:   3'- gaUGCCGCUGU--GCCugaGC-CAGAAGC- -5'
23602 5' -54.8 NC_005261.1 + 5518 0.66 0.952754
Target:  5'- -aGCGGCGGCGaGGccGC-CGG-CUUCGg -3'
miRNA:   3'- gaUGCCGCUGUgCC--UGaGCCaGAAGC- -5'
23602 5' -54.8 NC_005261.1 + 86059 0.66 0.952754
Target:  5'- -cACGGCGGCGCGGuACgUGGcCUg-- -3'
miRNA:   3'- gaUGCCGCUGUGCC-UGaGCCaGAagc -5'
23602 5' -54.8 NC_005261.1 + 401 0.66 0.948632
Target:  5'- -gGCGGCGGCAgCGGuCcUGGUCccgCGa -3'
miRNA:   3'- gaUGCCGCUGU-GCCuGaGCCAGaa-GC- -5'
23602 5' -54.8 NC_005261.1 + 48678 0.66 0.948632
Target:  5'- -aACGGCGACuACGGGCccgCGGgccaUCa -3'
miRNA:   3'- gaUGCCGCUG-UGCCUGa--GCCaga-AGc -5'
23602 5' -54.8 NC_005261.1 + 71615 0.66 0.948632
Target:  5'- -cGCGGCccgGGCGCGGGCcCGGgCggCGg -3'
miRNA:   3'- gaUGCCG---CUGUGCCUGaGCCaGaaGC- -5'
23602 5' -54.8 NC_005261.1 + 128107 0.66 0.948632
Target:  5'- -aGCGGCGcgGCGCGGGgUCGGgccgagugCGg -3'
miRNA:   3'- gaUGCCGC--UGUGCCUgAGCCagaa----GC- -5'
23602 5' -54.8 NC_005261.1 + 138072 0.66 0.948632
Target:  5'- -gGCGGCGGCAgCGGuCcUGGUCccgCGa -3'
miRNA:   3'- gaUGCCGCUGU-GCCuGaGCCAGaa-GC- -5'
23602 5' -54.8 NC_005261.1 + 115470 0.66 0.948632
Target:  5'- cCU-CGGUGucgguCGCGGGCUCGGcCgcggCGg -3'
miRNA:   3'- -GAuGCCGCu----GUGCCUGAGCCaGaa--GC- -5'
23602 5' -54.8 NC_005261.1 + 118004 0.66 0.944279
Target:  5'- -gGCGGCGGCGCuGGACgcugUCGGaCgcacgCGg -3'
miRNA:   3'- gaUGCCGCUGUG-CCUG----AGCCaGaa---GC- -5'
23602 5' -54.8 NC_005261.1 + 84365 0.66 0.944279
Target:  5'- ---aGGCGccgccCGCGGGCUCGGcCU-CGg -3'
miRNA:   3'- gaugCCGCu----GUGCCUGAGCCaGAaGC- -5'
23602 5' -54.8 NC_005261.1 + 43371 0.66 0.944279
Target:  5'- gCUGCGGCGGCAuCGGcCUCGcGgugcCGg -3'
miRNA:   3'- -GAUGCCGCUGU-GCCuGAGC-CagaaGC- -5'
23602 5' -54.8 NC_005261.1 + 75479 0.66 0.939691
Target:  5'- -gGCGGCGGCGCGGGCcgcuacgagcgCGGggcgCUggaggCGc -3'
miRNA:   3'- gaUGCCGCUGUGCCUGa----------GCCa---GAa----GC- -5'
23602 5' -54.8 NC_005261.1 + 97579 0.66 0.939691
Target:  5'- gCU-CGGUGGCGCGGGCggagCGGg---CGg -3'
miRNA:   3'- -GAuGCCGCUGUGCCUGa---GCCagaaGC- -5'
23602 5' -54.8 NC_005261.1 + 86904 0.66 0.939691
Target:  5'- -cGCGcGCGGCGCGGACcCGcGUCc--- -3'
miRNA:   3'- gaUGC-CGCUGUGCCUGaGC-CAGaagc -5'
23602 5' -54.8 NC_005261.1 + 105247 0.66 0.934867
Target:  5'- uCUGCGGCGGCauccgcgcgACaGGCUCGG-CgggCGg -3'
miRNA:   3'- -GAUGCCGCUG---------UGcCUGAGCCaGaa-GC- -5'
23602 5' -54.8 NC_005261.1 + 68996 0.66 0.934867
Target:  5'- ---gGGCcGCGCGGGCgccgCGG-CUUCGu -3'
miRNA:   3'- gaugCCGcUGUGCCUGa---GCCaGAAGC- -5'
23602 5' -54.8 NC_005261.1 + 33780 0.66 0.934371
Target:  5'- -cGCGGCGagcgcugggccccGCGCGGGCggCGGgcuugUCUUUGg -3'
miRNA:   3'- gaUGCCGC-------------UGUGCCUGa-GCC-----AGAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.