miRNA display CGI


Results 1 - 20 of 761 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23605 3' -64.8 NC_005261.1 + 116392 0.66 0.560485
Target:  5'- cGgGGGgCCGCGUgCACgCGCaC-CCGCUu -3'
miRNA:   3'- -CgCCUgGGCGCAgGUG-GCG-GcGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 95496 0.66 0.560485
Target:  5'- gGCGGcaucgACCCGCGgCCAUU-CCG-CGCCa -3'
miRNA:   3'- -CGCC-----UGGGCGCaGGUGGcGGCgGCGG- -5'
23605 3' -64.8 NC_005261.1 + 34038 0.66 0.560485
Target:  5'- cGCGGcGCgCGCGcugCC-CUGCCuGCaCGCCu -3'
miRNA:   3'- -CGCC-UGgGCGCa--GGuGGCGG-CG-GCGG- -5'
23605 3' -64.8 NC_005261.1 + 5503 0.66 0.560485
Target:  5'- aGCuGGGgCCGCGgcagCgGCgGCgagGCCGCCg -3'
miRNA:   3'- -CG-CCUgGGCGCa---GgUGgCGg--CGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 110695 0.66 0.560485
Target:  5'- -aGGGCuuCCGCGcCCA-CGUgGCCGUCa -3'
miRNA:   3'- cgCCUG--GGCGCaGGUgGCGgCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 12436 0.66 0.560485
Target:  5'- -aGGGCUUgcgGCGUCgGCCGCguCGgCGCCc -3'
miRNA:   3'- cgCCUGGG---CGCAGgUGGCG--GCgGCGG- -5'
23605 3' -64.8 NC_005261.1 + 77004 0.66 0.560485
Target:  5'- cGCGcGCgCGCG-CCGCCcuccucGCCGaCGCCg -3'
miRNA:   3'- -CGCcUGgGCGCaGGUGG------CGGCgGCGG- -5'
23605 3' -64.8 NC_005261.1 + 84332 0.66 0.557669
Target:  5'- cCGGGgCCGCGcUCgCGCaCGCgccaaagucgaaggCGCCGCCn -3'
miRNA:   3'- cGCCUgGGCGC-AG-GUG-GCG--------------GCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 74950 0.66 0.551116
Target:  5'- cGCGGGCgCGCucggCgCGCUcgagGCCGCgCGCCc -3'
miRNA:   3'- -CGCCUGgGCGca--G-GUGG----CGGCG-GCGG- -5'
23605 3' -64.8 NC_005261.1 + 8677 0.66 0.551116
Target:  5'- -gGGGCCCGCGaCCACgUGagaaCGCUGgCa -3'
miRNA:   3'- cgCCUGGGCGCaGGUG-GCg---GCGGCgG- -5'
23605 3' -64.8 NC_005261.1 + 4576 0.66 0.551116
Target:  5'- gGCGGGuCCgGCGgggcgCC-CC-CCGgCGCCa -3'
miRNA:   3'- -CGCCU-GGgCGCa----GGuGGcGGCgGCGG- -5'
23605 3' -64.8 NC_005261.1 + 55575 0.66 0.551116
Target:  5'- uCGccCCCGCaGUCCGCgGCggCGUCGCCc -3'
miRNA:   3'- cGCcuGGGCG-CAGGUGgCG--GCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 72933 0.66 0.551116
Target:  5'- -gGGugUCGCG--CAgCGCCGgCGCCg -3'
miRNA:   3'- cgCCugGGCGCagGUgGCGGCgGCGG- -5'
23605 3' -64.8 NC_005261.1 + 83844 0.66 0.551116
Target:  5'- gGCGGG-CCGCGgccCCGCUgggcugggccggGCCGgaCGCCg -3'
miRNA:   3'- -CGCCUgGGCGCa--GGUGG------------CGGCg-GCGG- -5'
23605 3' -64.8 NC_005261.1 + 101084 0.66 0.551116
Target:  5'- ---cGCCCGCGgCCGCCuGCagCGCgGCCg -3'
miRNA:   3'- cgccUGGGCGCaGGUGG-CG--GCGgCGG- -5'
23605 3' -64.8 NC_005261.1 + 110748 0.66 0.551116
Target:  5'- aGCGGgcugagcuACCUGC-UgCACCGCaCaCCGCCg -3'
miRNA:   3'- -CGCC--------UGGGCGcAgGUGGCG-GcGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 117939 0.66 0.551116
Target:  5'- uGCGG-CCCGUGcgcgCuCGCUGCuacgggcgcgcuCGCUGCCa -3'
miRNA:   3'- -CGCCuGGGCGCa---G-GUGGCG------------GCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 130220 0.66 0.551116
Target:  5'- gGCGGAagaGCGUCgGCCcgcucaggcGCCG-CGCCa -3'
miRNA:   3'- -CGCCUgggCGCAGgUGG---------CGGCgGCGG- -5'
23605 3' -64.8 NC_005261.1 + 126605 0.66 0.551116
Target:  5'- aCaGGCCCGCGUaCCGCUcuucCCGCgCGCg -3'
miRNA:   3'- cGcCUGGGCGCA-GGUGGc---GGCG-GCGg -5'
23605 3' -64.8 NC_005261.1 + 130856 0.66 0.551116
Target:  5'- cGCGcGCCCG-GcCgGgCGCCGCgGCCu -3'
miRNA:   3'- -CGCcUGGGCgCaGgUgGCGGCGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.