miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23606 3' -61 NC_005261.1 + 119680 0.66 0.69233
Target:  5'- uUCCAGCGCGU-CGGCaggUC-CCGCUcCa -3'
miRNA:   3'- -GGGUCGCGCAgGUCGa--AGcGGCGGaG- -5'
23606 3' -61 NC_005261.1 + 40092 0.66 0.69233
Target:  5'- -gCAGCGCGUcgcacgCCAGCc-CGCCGCa-- -3'
miRNA:   3'- ggGUCGCGCA------GGUCGaaGCGGCGgag -5'
23606 3' -61 NC_005261.1 + 20878 0.66 0.69233
Target:  5'- gCCGGCcauCG-CCAGCUcgUgGCCGCCa- -3'
miRNA:   3'- gGGUCGc--GCaGGUCGA--AgCGGCGGag -5'
23606 3' -61 NC_005261.1 + 59483 0.66 0.69233
Target:  5'- gCCGGCGCGgccgccgcgCCAGCggcggcggUCGCaCGCg-- -3'
miRNA:   3'- gGGUCGCGCa--------GGUCGa-------AGCG-GCGgag -5'
23606 3' -61 NC_005261.1 + 76051 0.66 0.69233
Target:  5'- aUCAGCGUGgCCGGCgggCGCCaCCa- -3'
miRNA:   3'- gGGUCGCGCaGGUCGaa-GCGGcGGag -5'
23606 3' -61 NC_005261.1 + 106231 0.66 0.69233
Target:  5'- gCCUGGCGCGgccgCCgcgcccuaccgGGCcgcCGCCGCCg- -3'
miRNA:   3'- -GGGUCGCGCa---GG-----------UCGaa-GCGGCGGag -5'
23606 3' -61 NC_005261.1 + 11042 0.66 0.69233
Target:  5'- cCCCGGCGgcacucgggcgcCGcCCAGg--CGCCGCCa- -3'
miRNA:   3'- -GGGUCGC------------GCaGGUCgaaGCGGCGGag -5'
23606 3' -61 NC_005261.1 + 39318 0.66 0.69233
Target:  5'- uUCCu-CGCGUCCAaCcgCGCCGCCg- -3'
miRNA:   3'- -GGGucGCGCAGGUcGaaGCGGCGGag -5'
23606 3' -61 NC_005261.1 + 55151 0.66 0.69233
Target:  5'- aUguGCGCGcgCgAGCgcCGCCGCCg- -3'
miRNA:   3'- gGguCGCGCa-GgUCGaaGCGGCGGag -5'
23606 3' -61 NC_005261.1 + 66359 0.66 0.69233
Target:  5'- gCCAGCGCGagCUcGCgccccggCGCCcCCUCg -3'
miRNA:   3'- gGGUCGCGCa-GGuCGaa-----GCGGcGGAG- -5'
23606 3' -61 NC_005261.1 + 87771 0.66 0.69233
Target:  5'- cCCUGGCGCGagggucaCCGuCUUgGCCGCCg- -3'
miRNA:   3'- -GGGUCGCGCa------GGUcGAAgCGGCGGag -5'
23606 3' -61 NC_005261.1 + 100807 0.66 0.69233
Target:  5'- uCCCggaagGGCGCGUgCGcCUgCGCCGCC-Ca -3'
miRNA:   3'- -GGG-----UCGCGCAgGUcGAaGCGGCGGaG- -5'
23606 3' -61 NC_005261.1 + 116271 0.66 0.69233
Target:  5'- gCCCGGCggcgucgugaugGCGUCguGCUUCaCCaGCCg- -3'
miRNA:   3'- -GGGUCG------------CGCAGguCGAAGcGG-CGGag -5'
23606 3' -61 NC_005261.1 + 43309 0.66 0.691348
Target:  5'- gCCGGCaGCccggCCAGCUUCGCCcgguacguagacuGgCUCg -3'
miRNA:   3'- gGGUCG-CGca--GGUCGAAGCGG-------------CgGAG- -5'
23606 3' -61 NC_005261.1 + 75823 0.66 0.691348
Target:  5'- gCCCGGCGCGgCCgcgcccggggaggGGCgcgCGgCGCCg- -3'
miRNA:   3'- -GGGUCGCGCaGG-------------UCGaa-GCgGCGGag -5'
23606 3' -61 NC_005261.1 + 101825 0.66 0.682487
Target:  5'- cUCCAGCGCG--CGGCUgaUCuCCGCCg- -3'
miRNA:   3'- -GGGUCGCGCagGUCGA--AGcGGCGGag -5'
23606 3' -61 NC_005261.1 + 98259 0.66 0.682487
Target:  5'- -gCGGCGCGUCaGGCggCGCgCGCgUUCg -3'
miRNA:   3'- ggGUCGCGCAGgUCGaaGCG-GCG-GAG- -5'
23606 3' -61 NC_005261.1 + 73450 0.66 0.682487
Target:  5'- gCCGGcCGCGUCC-GCgucCGCgCGCCc- -3'
miRNA:   3'- gGGUC-GCGCAGGuCGaa-GCG-GCGGag -5'
23606 3' -61 NC_005261.1 + 31426 0.66 0.682487
Target:  5'- gCCCGGggagGCG-CUGGCggCGCCGCC-Cg -3'
miRNA:   3'- -GGGUCg---CGCaGGUCGaaGCGGCGGaG- -5'
23606 3' -61 NC_005261.1 + 29295 0.66 0.682487
Target:  5'- cUCCGGCGaggccugGcCCGGCagcgCGCCGCCg- -3'
miRNA:   3'- -GGGUCGCg------CaGGUCGaa--GCGGCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.