miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23606 5' -56 NC_005261.1 + 102831 0.66 0.904607
Target:  5'- uCUGCGccUCGcgccgcgccacgugcUgGGCCAGcagcgCGUCCAGGa -3'
miRNA:   3'- -GACGU--AGU---------------AgCCGGUCa----GCAGGUCCg -5'
23606 5' -56 NC_005261.1 + 87383 0.66 0.902077
Target:  5'- -gGCAgaugUCcUCGGCC-GUCGUCUcgacGGCg -3'
miRNA:   3'- gaCGU----AGuAGCCGGuCAGCAGGu---CCG- -5'
23606 5' -56 NC_005261.1 + 87559 0.66 0.902077
Target:  5'- -gGCGUCAgcUUGGCCGucagccccgcGcCGcCCAGGCc -3'
miRNA:   3'- gaCGUAGU--AGCCGGU----------CaGCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 58350 0.66 0.902077
Target:  5'- -aGCcgCGcCGGCCA---GUCCAGGUg -3'
miRNA:   3'- gaCGuaGUaGCCGGUcagCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 107535 0.66 0.901439
Target:  5'- -cGCGUCggCGGCCAccagcaCGUCCGagagcacGGCa -3'
miRNA:   3'- gaCGUAGuaGCCGGUca----GCAGGU-------CCG- -5'
23606 5' -56 NC_005261.1 + 54341 0.66 0.895588
Target:  5'- -cGCGUaCAggucgaUGGCCAGUCccagGUCCgcGGGCa -3'
miRNA:   3'- gaCGUA-GUa-----GCCGGUCAG----CAGG--UCCG- -5'
23606 5' -56 NC_005261.1 + 62431 0.66 0.888867
Target:  5'- -gGCcagCG-CGaGCCGGUCG-CCGGGCc -3'
miRNA:   3'- gaCGua-GUaGC-CGGUCAGCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 67173 0.66 0.888867
Target:  5'- -gGCGUCAcaCGGCCA--CGUgcccccCCAGGCa -3'
miRNA:   3'- gaCGUAGUa-GCCGGUcaGCA------GGUCCG- -5'
23606 5' -56 NC_005261.1 + 100787 0.66 0.888867
Target:  5'- -cGCGUCcgCaGGCCAGcagGUCCcggaaGGGCg -3'
miRNA:   3'- gaCGUAGuaG-CCGGUCag-CAGG-----UCCG- -5'
23606 5' -56 NC_005261.1 + 94459 0.66 0.888867
Target:  5'- -cGCGUCccccuccgcGUCGGC--GUCGUCCcgcGGGCc -3'
miRNA:   3'- gaCGUAG---------UAGCCGguCAGCAGG---UCCG- -5'
23606 5' -56 NC_005261.1 + 122286 0.66 0.881916
Target:  5'- -aGCAUCAgcgCGGCCccgcugccgcAGgcgaCGcCCGGGCc -3'
miRNA:   3'- gaCGUAGUa--GCCGG----------UCa---GCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 11010 0.66 0.881916
Target:  5'- -gGCuccUCGaCGGCCucGUCG-CCGGGCc -3'
miRNA:   3'- gaCGu--AGUaGCCGGu-CAGCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 12786 0.66 0.881916
Target:  5'- -gGC-UCGUCGGCgAGcUCGUCgucGGCg -3'
miRNA:   3'- gaCGuAGUAGCCGgUC-AGCAGgu-CCG- -5'
23606 5' -56 NC_005261.1 + 15293 0.66 0.881916
Target:  5'- -cGCgGUCG-CGGCCuccgGGUCGUcggagCCGGGCc -3'
miRNA:   3'- gaCG-UAGUaGCCGG----UCAGCA-----GGUCCG- -5'
23606 5' -56 NC_005261.1 + 53543 0.66 0.881916
Target:  5'- uUGCGcUCuUCGGCCGcGcCGcggcCCAGGCg -3'
miRNA:   3'- gACGU-AGuAGCCGGU-CaGCa---GGUCCG- -5'
23606 5' -56 NC_005261.1 + 100989 0.66 0.874741
Target:  5'- -cGCGUCGccgcgcUCcGCCAGccgcgCGUCCAGcGCg -3'
miRNA:   3'- gaCGUAGU------AGcCGGUCa----GCAGGUC-CG- -5'
23606 5' -56 NC_005261.1 + 136933 0.66 0.874741
Target:  5'- -cGCAUguggugguaCAUgGGCCGcGUCGU-CGGGCa -3'
miRNA:   3'- gaCGUA---------GUAgCCGGU-CAGCAgGUCCG- -5'
23606 5' -56 NC_005261.1 + 20028 0.66 0.874741
Target:  5'- -cGCgGUCAgcgGGCCGGUucCGUCC-GGCg -3'
miRNA:   3'- gaCG-UAGUag-CCGGUCA--GCAGGuCCG- -5'
23606 5' -56 NC_005261.1 + 103497 0.66 0.867345
Target:  5'- -aGaCGUCGUCGGCgccgcggacggCGG-CGUCCGcGGCa -3'
miRNA:   3'- gaC-GUAGUAGCCG-----------GUCaGCAGGU-CCG- -5'
23606 5' -56 NC_005261.1 + 104334 0.67 0.859736
Target:  5'- -cGCGUCcagCGGCCGGcCGUCgcgCAGcGCc -3'
miRNA:   3'- gaCGUAGua-GCCGGUCaGCAG---GUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.