miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23607 3' -62 NC_005261.1 + 74460 0.66 0.634032
Target:  5'- uGGGgGCGcCGCCC-CCGGCGcGgcgugcCUGg -3'
miRNA:   3'- uCCCgUGCaGCGGGaGGUCGC-Ca-----GAC- -5'
23607 3' -62 NC_005261.1 + 80887 0.66 0.634032
Target:  5'- cGGGCuucaGCGgCGCCUcCCAGgGGUCc- -3'
miRNA:   3'- uCCCG----UGCaGCGGGaGGUCgCCAGac -5'
23607 3' -62 NC_005261.1 + 98982 0.66 0.624111
Target:  5'- cGGaGCACGUCGUCCUCggcaaucuuCAGC-GUCg- -3'
miRNA:   3'- uCC-CGUGCAGCGGGAG---------GUCGcCAGac -5'
23607 3' -62 NC_005261.1 + 35038 0.66 0.624111
Target:  5'- -uGGCGCGcCGCCCUaaCGGCGGcCg- -3'
miRNA:   3'- ucCCGUGCaGCGGGAg-GUCGCCaGac -5'
23607 3' -62 NC_005261.1 + 43415 0.66 0.624111
Target:  5'- cGGGgGCGgccucCGCCg-CCGGCGGggagCUGg -3'
miRNA:   3'- uCCCgUGCa----GCGGgaGGUCGCCa---GAC- -5'
23607 3' -62 NC_005261.1 + 49797 0.66 0.624111
Target:  5'- cAGcGCgagACGUCGCCCUCC-GCGGg--- -3'
miRNA:   3'- -UCcCG---UGCAGCGGGAGGuCGCCagac -5'
23607 3' -62 NC_005261.1 + 104225 0.66 0.614197
Target:  5'- -cGGCGCGcaccgUGCCCUCCAGCGc---- -3'
miRNA:   3'- ucCCGUGCa----GCGGGAGGUCGCcagac -5'
23607 3' -62 NC_005261.1 + 10532 0.66 0.614197
Target:  5'- cGGcGCGCucgcuGUCGCCC-CCGGCGcGcCUGc -3'
miRNA:   3'- uCC-CGUG-----CAGCGGGaGGUCGC-CaGAC- -5'
23607 3' -62 NC_005261.1 + 46182 0.66 0.604295
Target:  5'- uGGGCGCaGUCGCgCUCCAaaaGCGcacGUCg- -3'
miRNA:   3'- uCCCGUG-CAGCGgGAGGU---CGC---CAGac -5'
23607 3' -62 NC_005261.1 + 93945 0.66 0.594412
Target:  5'- cGGGCGC--CGCCUcCgGGCGGUCg- -3'
miRNA:   3'- uCCCGUGcaGCGGGaGgUCGCCAGac -5'
23607 3' -62 NC_005261.1 + 98310 0.66 0.594412
Target:  5'- gGGGGCggGCGcCGCCg-CCAGCGG-Cg- -3'
miRNA:   3'- -UCCCG--UGCaGCGGgaGGUCGCCaGac -5'
23607 3' -62 NC_005261.1 + 34457 0.66 0.592438
Target:  5'- cGGGGCACGggccgggggcccCGUaCCUgCGGCGGgugCUGg -3'
miRNA:   3'- -UCCCGUGCa-----------GCG-GGAgGUCGCCa--GAC- -5'
23607 3' -62 NC_005261.1 + 14454 0.66 0.588495
Target:  5'- cGGGGCGCGcggcggagcucgcgcUgGUCCUCCAacGCGGUgUa -3'
miRNA:   3'- -UCCCGUGC---------------AgCGGGAGGU--CGCCAgAc -5'
23607 3' -62 NC_005261.1 + 61635 0.66 0.584555
Target:  5'- --cGCugGcCGCCCguccgCCGGCGGaCUGa -3'
miRNA:   3'- uccCGugCaGCGGGa----GGUCGCCaGAC- -5'
23607 3' -62 NC_005261.1 + 54490 0.66 0.584555
Target:  5'- cGGGCggcaggcgcaaACGcaggCGCCCUCCGGCGacggcGUCa- -3'
miRNA:   3'- uCCCG-----------UGCa---GCGGGAGGUCGC-----CAGac -5'
23607 3' -62 NC_005261.1 + 116195 0.67 0.564945
Target:  5'- uGGGCGCGUCGCCgcagaagcgCUCCAggaGCGuGUa-- -3'
miRNA:   3'- uCCCGUGCAGCGG---------GAGGU---CGC-CAgac -5'
23607 3' -62 NC_005261.1 + 28269 0.67 0.555203
Target:  5'- gGGGGCGCuGUUGCCgCcgCCGcggccGCGGUCg- -3'
miRNA:   3'- -UCCCGUG-CAGCGG-Ga-GGU-----CGCCAGac -5'
23607 3' -62 NC_005261.1 + 81678 0.67 0.554231
Target:  5'- uGGGGCACGacugcCGCCCgUCCGGgcccggcgccguuCGGUCc- -3'
miRNA:   3'- -UCCCGUGCa----GCGGG-AGGUC-------------GCCAGac -5'
23607 3' -62 NC_005261.1 + 109341 0.67 0.545511
Target:  5'- cGGGGUcggcggccGCGUCGCCgUCCAGCcGcUCg- -3'
miRNA:   3'- -UCCCG--------UGCAGCGGgAGGUCGcC-AGac -5'
23607 3' -62 NC_005261.1 + 93479 0.67 0.545511
Target:  5'- gGGGcGCGCGUCGCCCg-CGGCGa---- -3'
miRNA:   3'- -UCC-CGUGCAGCGGGagGUCGCcagac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.