miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23607 5' -56.3 NC_005261.1 + 4050 0.66 0.881881
Target:  5'- -aCAGCGCGUUC-UGcgCGgccaugGCGUCCc -3'
miRNA:   3'- aaGUCGCGCAGGuACa-GCaa----CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 62219 0.66 0.881881
Target:  5'- ---cGCGCGgCCGcGUC--UGCGCCCu -3'
miRNA:   3'- aaguCGCGCaGGUaCAGcaACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 104879 0.66 0.874673
Target:  5'- gUCAGCGuCGaucgCCGccgCG-UGCGCCCg -3'
miRNA:   3'- aAGUCGC-GCa---GGUacaGCaACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 34681 0.66 0.874673
Target:  5'- -gCAGCGCGcUgCGUGaCGgUGgGCCCc -3'
miRNA:   3'- aaGUCGCGC-AgGUACaGCaACgCGGG- -5'
23607 5' -56.3 NC_005261.1 + 108219 0.66 0.874673
Target:  5'- -aCGGCGCGcUCCAgcaUGgCGcacGUGCCCg -3'
miRNA:   3'- aaGUCGCGC-AGGU---ACaGCaa-CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 99678 0.66 0.874673
Target:  5'- gUCAGCGCGcugCCcgGgaugaGgcGCGCCa -3'
miRNA:   3'- aAGUCGCGCa--GGuaCag---CaaCGCGGg -5'
23607 5' -56.3 NC_005261.1 + 82051 0.66 0.874673
Target:  5'- gUCAGCGCGggccacgucgCCggGUCGacgGCGUgCCg -3'
miRNA:   3'- aAGUCGCGCa---------GGuaCAGCaa-CGCG-GG- -5'
23607 5' -56.3 NC_005261.1 + 101255 0.66 0.870242
Target:  5'- -gCAGCGCGUCgAUGcgcuccgcaaagggcUCcaUGgGCCCg -3'
miRNA:   3'- aaGUCGCGCAGgUAC---------------AGcaACgCGGG- -5'
23607 5' -56.3 NC_005261.1 + 133716 0.66 0.867244
Target:  5'- -cCGGCGcCGUCUAcGUCGggGCGgCg -3'
miRNA:   3'- aaGUCGC-GCAGGUaCAGCaaCGCgGg -5'
23607 5' -56.3 NC_005261.1 + 81297 0.66 0.867244
Target:  5'- -gCGGCGCGcacgUCCGUGcCGUUGUcggggucgucGCCg -3'
miRNA:   3'- aaGUCGCGC----AGGUACaGCAACG----------CGGg -5'
23607 5' -56.3 NC_005261.1 + 104073 0.66 0.864973
Target:  5'- --gAGCGCGUCCAgcUCGgcggacagggcggcgGCGCuCCg -3'
miRNA:   3'- aagUCGCGCAGGUacAGCaa-------------CGCG-GG- -5'
23607 5' -56.3 NC_005261.1 + 110223 0.66 0.859598
Target:  5'- cUCGGCGaCGccUCCAgcgUGggcggCGcgGCGCCCg -3'
miRNA:   3'- aAGUCGC-GC--AGGU---ACa----GCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 106664 0.66 0.859598
Target:  5'- -cCGGCGCGgucgUCCAg--CGc-GCGCCCg -3'
miRNA:   3'- aaGUCGCGC----AGGUacaGCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 57400 0.66 0.859598
Target:  5'- --gAGCGCGcCCGUGauccgCGgccgGCGCCg -3'
miRNA:   3'- aagUCGCGCaGGUACa----GCaa--CGCGGg -5'
23607 5' -56.3 NC_005261.1 + 86197 0.66 0.859598
Target:  5'- --gAGCGgGcUCCGcGUCGgcGCGCCg -3'
miRNA:   3'- aagUCGCgC-AGGUaCAGCaaCGCGGg -5'
23607 5' -56.3 NC_005261.1 + 124616 0.66 0.851743
Target:  5'- -aUAGCGCGUCCAg--CGgcaucUGCGCg- -3'
miRNA:   3'- aaGUCGCGCAGGUacaGCa----ACGCGgg -5'
23607 5' -56.3 NC_005261.1 + 40747 0.66 0.851743
Target:  5'- aUCAGCGUGUaUGUGUCGgucugcaGUGCCa -3'
miRNA:   3'- aAGUCGCGCAgGUACAGCaa-----CGCGGg -5'
23607 5' -56.3 NC_005261.1 + 4499 0.66 0.851743
Target:  5'- -cCuGCGCGggccCCA-GUCGc-GCGCCCg -3'
miRNA:   3'- aaGuCGCGCa---GGUaCAGCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 17001 0.66 0.851743
Target:  5'- aUCAGCGCcagCAUGUCGcacGCGgCCg -3'
miRNA:   3'- aAGUCGCGcagGUACAGCaa-CGCgGG- -5'
23607 5' -56.3 NC_005261.1 + 53255 0.66 0.846932
Target:  5'- ---cGCGCGUCCcggucgcagaccagcAUGUCGauggagGCGCCa -3'
miRNA:   3'- aaguCGCGCAGG---------------UACAGCaa----CGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.