miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 44674 0.66 0.716199
Target:  5'- cGCGCCUGGAGacguaccuCGCGGagCUCGc-GGCGa -3'
miRNA:   3'- -CGCGGACCUC--------GUGCCg-GGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 97088 0.66 0.716199
Target:  5'- gGCGCCggcugggccgGGGGCGCcagccgGGCCgCGgccggAGGCGc -3'
miRNA:   3'- -CGCGGa---------CCUCGUG------CCGGgGCa----UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 23276 0.66 0.716199
Target:  5'- aGCGCCUcccAGCACGcGUCC-GUGGGCa -3'
miRNA:   3'- -CGCGGAcc-UCGUGC-CGGGgCAUCUGc -5'
23611 5' -60.9 NC_005261.1 + 2995 0.66 0.716199
Target:  5'- -gGCCUGGcGGCcCGGCgCCG-GGGCu -3'
miRNA:   3'- cgCGGACC-UCGuGCCGgGGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 60361 0.66 0.716199
Target:  5'- cGCGCCaGGcAGUGCuuGGUCUCGUuGGCGa -3'
miRNA:   3'- -CGCGGaCC-UCGUG--CCGGGGCAuCUGC- -5'
23611 5' -60.9 NC_005261.1 + 105613 0.66 0.70654
Target:  5'- aCGCCUGcGGCACGuccccGCuCCCGUgcgggucaaAGACGu -3'
miRNA:   3'- cGCGGACcUCGUGC-----CG-GGGCA---------UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 19942 0.66 0.70654
Target:  5'- aGCGuCCUGGgcggggguGGgGCGGCCUCGgcuGCGg -3'
miRNA:   3'- -CGC-GGACC--------UCgUGCCGGGGCaucUGC- -5'
23611 5' -60.9 NC_005261.1 + 34609 0.66 0.70654
Target:  5'- -gGCCUGGccgacgcGCugGaGCCCCuGaUAGGCGa -3'
miRNA:   3'- cgCGGACCu------CGugC-CGGGG-C-AUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 69761 0.66 0.70654
Target:  5'- aGCGC--GGGGgGCGGCgCCGgGGACu -3'
miRNA:   3'- -CGCGgaCCUCgUGCCGgGGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 127346 0.66 0.70654
Target:  5'- aGCGgCgGGGcGCugGGCCCgCGUGG-Cu -3'
miRNA:   3'- -CGCgGaCCU-CGugCCGGG-GCAUCuGc -5'
23611 5' -60.9 NC_005261.1 + 11901 0.66 0.70654
Target:  5'- cGCGCCcgccGcGGGCcCGGCCCgGccGGCGg -3'
miRNA:   3'- -CGCGGa---C-CUCGuGCCGGGgCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 32527 0.66 0.70654
Target:  5'- cGCGCCcGGccC-CGGCCCCGgccgcGGCGc -3'
miRNA:   3'- -CGCGGaCCucGuGCCGGGGCau---CUGC- -5'
23611 5' -60.9 NC_005261.1 + 59480 0.66 0.70654
Target:  5'- aGCGCC---GGCGCGGCCgCCGcgccagcGGCGg -3'
miRNA:   3'- -CGCGGaccUCGUGCCGG-GGCau-----CUGC- -5'
23611 5' -60.9 NC_005261.1 + 62558 0.66 0.70654
Target:  5'- gGCGCCgccAGCAUGcGCCCCGgcGccACGc -3'
miRNA:   3'- -CGCGGaccUCGUGC-CGGGGCauC--UGC- -5'
23611 5' -60.9 NC_005261.1 + 109367 0.66 0.70654
Target:  5'- -aGCCgcucGAGCGCGGCCCaGaGGGCc -3'
miRNA:   3'- cgCGGac--CUCGUGCCGGGgCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 136447 0.66 0.70654
Target:  5'- gGCGUCgcaGGGGCACGcggcaGCCCC--AGACu -3'
miRNA:   3'- -CGCGGa--CCUCGUGC-----CGGGGcaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 43812 0.66 0.70654
Target:  5'- gGCGCC-GG-GCGCGcCCuCCGUGGAg- -3'
miRNA:   3'- -CGCGGaCCuCGUGCcGG-GGCAUCUgc -5'
23611 5' -60.9 NC_005261.1 + 45644 0.66 0.70654
Target:  5'- cGCGCC-GGAGCAguGCCCaGcGGGCGu -3'
miRNA:   3'- -CGCGGaCCUCGUgcCGGGgCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 59150 0.66 0.70654
Target:  5'- cGCGCCccgGGcGCGCGGCgCCCGc----- -3'
miRNA:   3'- -CGCGGa--CCuCGUGCCG-GGGCaucugc -5'
23611 5' -60.9 NC_005261.1 + 9987 0.66 0.705571
Target:  5'- cGCGCCUcG-GCGCGGCcacccgcuugccaCCCGaccGGGCGg -3'
miRNA:   3'- -CGCGGAcCuCGUGCCG-------------GGGCa--UCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.