miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 3' -65.9 NC_005261.1 + 131444 0.66 0.504891
Target:  5'- cCCCCUUgcgCCgCgCCUCgCGgGcGCCuCCCGc -3'
miRNA:   3'- -GGGGAAa--GG-G-GGAGgGCgC-CGG-GGGC- -5'
23612 3' -65.9 NC_005261.1 + 121848 0.66 0.504891
Target:  5'- -aCCgg-CgCCagcagCCCGCGGCUCCCGc -3'
miRNA:   3'- ggGGaaaGgGGga---GGGCGCCGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 77492 0.66 0.504891
Target:  5'- gCCCCguacUUCCUgCCgCCCGCcaucgccgccGcGCCCCCGc -3'
miRNA:   3'- -GGGGa---AAGGG-GGaGGGCG----------C-CGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 36695 0.66 0.504891
Target:  5'- gUCCCUcggCCCCCcgcgcugaCCGcCGGCCcuaCCCGg -3'
miRNA:   3'- -GGGGAaa-GGGGGag------GGC-GCCGG---GGGC- -5'
23612 3' -65.9 NC_005261.1 + 137592 0.66 0.504891
Target:  5'- gCCCC--UCCCCCacCCCGC-GCCCa-- -3'
miRNA:   3'- -GGGGaaAGGGGGa-GGGCGcCGGGggc -5'
23612 3' -65.9 NC_005261.1 + 1347 0.66 0.504891
Target:  5'- gCgCCUgcaCCagcgUCUCCCGCGGgCCCUGg -3'
miRNA:   3'- -GgGGAaa-GGg---GGAGGGCGCCgGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 84654 0.66 0.495909
Target:  5'- gUCCCggcuggcgCCgCCCgcgCCCGCGGCCgCg- -3'
miRNA:   3'- -GGGGaaa-----GG-GGGa--GGGCGCCGGgGgc -5'
23612 3' -65.9 NC_005261.1 + 133768 0.66 0.495909
Target:  5'- gCCCCgugccUCCacgCCCUCgUGCGGCgcaUCCCGc -3'
miRNA:   3'- -GGGGaa---AGG---GGGAGgGCGCCG---GGGGC- -5'
23612 3' -65.9 NC_005261.1 + 116626 0.66 0.492337
Target:  5'- gCCCg--CCCgCCgacgagggcgaggCCCGCGcGCCCgCCGc -3'
miRNA:   3'- gGGGaaaGGG-GGa------------GGGCGC-CGGG-GGC- -5'
23612 3' -65.9 NC_005261.1 + 10928 0.66 0.487001
Target:  5'- gCCgCgacaacCCCCUUCUCGCGgggcccGCCCCCa -3'
miRNA:   3'- -GGgGaaa---GGGGGAGGGCGC------CGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 24093 0.66 0.487001
Target:  5'- gCCCCca-CCCCCgCCUGCccaCCCCGg -3'
miRNA:   3'- -GGGGaaaGGGGGaGGGCGccgGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 52651 0.66 0.487001
Target:  5'- uCUCCg--CCCCCggcCCCGCGcGCaCUUCGa -3'
miRNA:   3'- -GGGGaaaGGGGGa--GGGCGC-CG-GGGGC- -5'
23612 3' -65.9 NC_005261.1 + 5182 0.66 0.487001
Target:  5'- -gCCgggUCCUCCU-CCG-GGCCCCCc -3'
miRNA:   3'- ggGGaa-AGGGGGAgGGCgCCGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 38585 0.66 0.487001
Target:  5'- aUCC--UCUCCCUgCUgGCGGCCCgCGg -3'
miRNA:   3'- gGGGaaAGGGGGA-GGgCGCCGGGgGC- -5'
23612 3' -65.9 NC_005261.1 + 72722 0.66 0.487001
Target:  5'- gCCCgccgCCCCgUCCgCGCGGgCggCCCGc -3'
miRNA:   3'- gGGGaaa-GGGGgAGG-GCGCCgG--GGGC- -5'
23612 3' -65.9 NC_005261.1 + 1 0.66 0.478169
Target:  5'- cCCCCaccgCCCCUCgugcaGCGGgCCCCGc -3'
miRNA:   3'- -GGGGaaagGGGGAGgg---CGCCgGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 78137 0.66 0.478169
Target:  5'- cCCCCgccgCCCCggcgCCCGCcGCUgCCGg -3'
miRNA:   3'- -GGGGaaagGGGGa---GGGCGcCGGgGGC- -5'
23612 3' -65.9 NC_005261.1 + 51412 0.66 0.478169
Target:  5'- gCCCgcgcgCCCaCCgCCUGCuGGgCCCCGg -3'
miRNA:   3'- gGGGaaa--GGG-GGaGGGCG-CCgGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 78103 0.66 0.469416
Target:  5'- gCCCaggCCCCggCCC-CGGCCCCa- -3'
miRNA:   3'- gGGGaaaGGGGgaGGGcGCCGGGGgc -5'
23612 3' -65.9 NC_005261.1 + 924 0.66 0.469416
Target:  5'- uUCCUUUgCCCC-CCCaGCcgGGCCUCCc -3'
miRNA:   3'- gGGGAAAgGGGGaGGG-CG--CCGGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.