miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 5' -53.8 NC_005261.1 + 22578 0.66 0.963333
Target:  5'- gGgGGAGAgCGGCGGAGGcGGCGCa--- -3'
miRNA:   3'- gCgUUUCU-GCUGCCUCU-CUGCGcuca -5'
23612 5' -53.8 NC_005261.1 + 13117 0.66 0.963333
Target:  5'- gGCGucGGCGGCcGcGGGGCGCGuGUg -3'
miRNA:   3'- gCGUuuCUGCUGcCuCUCUGCGCuCA- -5'
23612 5' -53.8 NC_005261.1 + 29426 0.66 0.963333
Target:  5'- cCGCGGGGcccGCGGCcguguucgugccGGAGAuggggGACGCGGGg -3'
miRNA:   3'- -GCGUUUC---UGCUG------------CCUCU-----CUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 81231 0.66 0.961949
Target:  5'- gCGCccGAGGGCGGCGGGcacacguaaaaGCGCGAGUu -3'
miRNA:   3'- -GCG--UUUCUGCUGCCUcuc--------UGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 117762 0.66 0.961243
Target:  5'- aCGCGAcucggguccggaucgGGGCGGggaGGAGGGAgGCGAa- -3'
miRNA:   3'- -GCGUU---------------UCUGCUg--CCUCUCUgCGCUca -5'
23612 5' -53.8 NC_005261.1 + 60060 0.66 0.959805
Target:  5'- gGCGAAGAgCGGCGGccGGucCGCGGGc -3'
miRNA:   3'- gCGUUUCU-GCUGCCucUCu-GCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 121429 0.66 0.95758
Target:  5'- cCGCuacGGGGCGGCGGGGcGGGCauggggccgucgaugGCGAGc -3'
miRNA:   3'- -GCGu--UUCUGCUGCCUC-UCUG---------------CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 112656 0.66 0.95605
Target:  5'- uCGCAgccGAGuACGAgCGGcuGGAG-CGCGAGg -3'
miRNA:   3'- -GCGU---UUC-UGCU-GCC--UCUCuGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 56163 0.66 0.95605
Target:  5'- gGCAgcGGCGgggcccGCGGGGAGgacgacGCGCGGGc -3'
miRNA:   3'- gCGUuuCUGC------UGCCUCUC------UGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 42173 0.66 0.95605
Target:  5'- aGCGAGccGugGACGcAG-GGCGCGAGc -3'
miRNA:   3'- gCGUUU--CugCUGCcUCuCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 23541 0.66 0.952063
Target:  5'- gGCAGAGGCGGCaGGAGccguCGCaGGUg -3'
miRNA:   3'- gCGUUUCUGCUG-CCUCucu-GCGcUCA- -5'
23612 5' -53.8 NC_005261.1 + 108878 0.66 0.950821
Target:  5'- aGCGGguGGACGACGGccgcgcugcccgccGGcgagcgGGGCGCGGGg -3'
miRNA:   3'- gCGUU--UCUGCUGCC--------------UC------UCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 81759 0.66 0.947841
Target:  5'- aCGCGAAGACGGCGcGGGccaGGAcgagcuCGCGGa- -3'
miRNA:   3'- -GCGUUUCUGCUGC-CUC---UCU------GCGCUca -5'
23612 5' -53.8 NC_005261.1 + 99762 0.66 0.947841
Target:  5'- aGCAcgucGGACGG-GGAGAGGCGgccCGGGUc -3'
miRNA:   3'- gCGUu---UCUGCUgCCUCUCUGC---GCUCA- -5'
23612 5' -53.8 NC_005261.1 + 90882 0.66 0.947841
Target:  5'- gCGCGcuGGGCGACGGcauGGCGCGGc- -3'
miRNA:   3'- -GCGUu-UCUGCUGCCucuCUGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 23465 0.66 0.947841
Target:  5'- gCGCcAGGcccGCGGCGGcGAGuGCGCGGGc -3'
miRNA:   3'- -GCGuUUC---UGCUGCCuCUC-UGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 25973 0.66 0.947406
Target:  5'- cCGCAGGGugGAgCGGGaaacgauGAGGgGUGGGg -3'
miRNA:   3'- -GCGUUUCugCU-GCCU-------CUCUgCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 7296 0.66 0.947406
Target:  5'- gGCAGAGggagagaAgGGgGGAGAGagaGCGCGAGa -3'
miRNA:   3'- gCGUUUC-------UgCUgCCUCUC---UGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 76557 0.67 0.945193
Target:  5'- gGCAuGGGCGAC-GAGGGcgagcucguccucacGCGCGAGc -3'
miRNA:   3'- gCGUuUCUGCUGcCUCUC---------------UGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 119455 0.67 0.94338
Target:  5'- aCGcCGAAGgacagcACGACGGAcGAGACGCccuuGGGg -3'
miRNA:   3'- -GC-GUUUC------UGCUGCCU-CUCUGCG----CUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.