Results 41 - 60 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23612 | 5' | -53.8 | NC_005261.1 | + | 60060 | 0.66 | 0.959805 |
Target: 5'- gGCGAAGAgCGGCGGccGGucCGCGGGc -3' miRNA: 3'- gCGUUUCU-GCUGCCucUCu-GCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 117762 | 0.66 | 0.961243 |
Target: 5'- aCGCGAcucggguccggaucgGGGCGGggaGGAGGGAgGCGAa- -3' miRNA: 3'- -GCGUU---------------UCUGCUg--CCUCUCUgCGCUca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 81231 | 0.66 | 0.961949 |
Target: 5'- gCGCccGAGGGCGGCGGGcacacguaaaaGCGCGAGUu -3' miRNA: 3'- -GCG--UUUCUGCUGCCUcuc--------UGCGCUCA- -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 13117 | 0.66 | 0.963333 |
Target: 5'- gGCGucGGCGGCcGcGGGGCGCGuGUg -3' miRNA: 3'- gCGUuuCUGCUGcCuCUCUGCGCuCA- -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 22578 | 0.66 | 0.963333 |
Target: 5'- gGgGGAGAgCGGCGGAGGcGGCGCa--- -3' miRNA: 3'- gCgUUUCU-GCUGCCUCU-CUGCGcuca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 90882 | 0.66 | 0.947841 |
Target: 5'- gCGCGcuGGGCGACGGcauGGCGCGGc- -3' miRNA: 3'- -GCGUu-UCUGCUGCCucuCUGCGCUca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 23465 | 0.66 | 0.947841 |
Target: 5'- gCGCcAGGcccGCGGCGGcGAGuGCGCGGGc -3' miRNA: 3'- -GCGuUUC---UGCUGCCuCUC-UGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 136242 | 0.67 | 0.933731 |
Target: 5'- aGCGAGGGCagagGGCcGAGAGAaggcaCGCGAGa -3' miRNA: 3'- gCGUUUCUG----CUGcCUCUCU-----GCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 5371 | 0.67 | 0.933731 |
Target: 5'- -aCGGAGACGGgGGAGGGAgG-GAGg -3' miRNA: 3'- gcGUUUCUGCUgCCUCUCUgCgCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 58277 | 0.67 | 0.933731 |
Target: 5'- cCGCGcucacGGGGcCGGCGcgccGGGGGGCGCGGGg -3' miRNA: 3'- -GCGU-----UUCU-GCUGC----CUCUCUGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 5321 | 0.67 | 0.938677 |
Target: 5'- --gGAGGGgGuaGgGGAGAGGCGCGGGUc -3' miRNA: 3'- gcgUUUCUgC--UgCCUCUCUGCGCUCA- -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 97823 | 0.67 | 0.94292 |
Target: 5'- cCGCA--GACGGCGGcaaaaacGGGGGCgGCGGGc -3' miRNA: 3'- -GCGUuuCUGCUGCC-------UCUCUG-CGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 28253 | 0.67 | 0.94338 |
Target: 5'- aGCGGGGGCugcuCGGGGGGGCGCu--- -3' miRNA: 3'- gCGUUUCUGcu--GCCUCUCUGCGcuca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 10615 | 0.67 | 0.94338 |
Target: 5'- aGCGAGGACGACuacGAG-GACGacuaCGAGg -3' miRNA: 3'- gCGUUUCUGCUGc--CUCuCUGC----GCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 20571 | 0.67 | 0.94338 |
Target: 5'- gCGCAgcGGCGcCGGc--GGCGCGGGUg -3' miRNA: 3'- -GCGUuuCUGCuGCCucuCUGCGCUCA- -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 1848 | 0.67 | 0.94338 |
Target: 5'- gCGCGAAGGCGcCGGGcccgaAGACGCGc-- -3' miRNA: 3'- -GCGUUUCUGCuGCCUc----UCUGCGCuca -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 119455 | 0.67 | 0.94338 |
Target: 5'- aCGcCGAAGgacagcACGACGGAcGAGACGCccuuGGGg -3' miRNA: 3'- -GC-GUUUC------UGCUGCCU-CUCUGCG----CUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 76557 | 0.67 | 0.945193 |
Target: 5'- gGCAuGGGCGAC-GAGGGcgagcucguccucacGCGCGAGc -3' miRNA: 3'- gCGUuUCUGCUGcCUCUC---------------UGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 7296 | 0.66 | 0.947406 |
Target: 5'- gGCAGAGggagagaAgGGgGGAGAGagaGCGCGAGa -3' miRNA: 3'- gCGUUUC-------UgCUgCCUCUC---UGCGCUCa -5' |
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23612 | 5' | -53.8 | NC_005261.1 | + | 25973 | 0.66 | 0.947406 |
Target: 5'- cCGCAGGGugGAgCGGGaaacgauGAGGgGUGGGg -3' miRNA: 3'- -GCGUUUCugCU-GCCU-------CUCUgCGCUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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