miRNA display CGI


Results 1 - 20 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23621 5' -61 NC_005261.1 + 28097 0.66 0.706898
Target:  5'- cGCGCCGcagcaaagggguuagAgGgGGggGCCUcgaggCGGGCGCCc -3'
miRNA:   3'- -CGCGGU---------------UgCgCCa-UGGA-----GCCCGCGGu -5'
23621 5' -61 NC_005261.1 + 55688 0.66 0.703013
Target:  5'- -gGCCAGCacgGCGGccacgGCCgcUUGGGCgGCCAc -3'
miRNA:   3'- cgCGGUUG---CGCCa----UGG--AGCCCG-CGGU- -5'
23621 5' -61 NC_005261.1 + 112503 0.66 0.703013
Target:  5'- -aGUCAACGCGcugcgacaaccuGUucagcuGCCUCuGGGUGCCGg -3'
miRNA:   3'- cgCGGUUGCGC------------CA------UGGAG-CCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 62431 0.66 0.703013
Target:  5'- -gGCCAGCGCGa-GCCggucgcCGGGCcCCAg -3'
miRNA:   3'- cgCGGUUGCGCcaUGGa-----GCCCGcGGU- -5'
23621 5' -61 NC_005261.1 + 67376 0.66 0.703013
Target:  5'- aGCGCCAccgcCGCGaagACCgccgCGcGCGCCAg -3'
miRNA:   3'- -CGCGGUu---GCGCca-UGGa---GCcCGCGGU- -5'
23621 5' -61 NC_005261.1 + 118820 0.66 0.703013
Target:  5'- uGCGCCcugGGCGCGGcacUGCCgcucUGcGGCGCgGa -3'
miRNA:   3'- -CGCGG---UUGCGCC---AUGGa---GC-CCGCGgU- -5'
23621 5' -61 NC_005261.1 + 124006 0.66 0.703013
Target:  5'- aGCGCgUAGCGCucguuUGCCguguagcCGGGCGCCu -3'
miRNA:   3'- -CGCG-GUUGCGcc---AUGGa------GCCCGCGGu -5'
23621 5' -61 NC_005261.1 + 126884 0.66 0.703013
Target:  5'- cCGCagCAGCGCaGGgcCCUCGGGgaaGCCc -3'
miRNA:   3'- cGCG--GUUGCG-CCauGGAGCCCg--CGGu -5'
23621 5' -61 NC_005261.1 + 129659 0.66 0.703013
Target:  5'- gGCGgCGGCagggGCGGgACCggGGGCGUCGc -3'
miRNA:   3'- -CGCgGUUG----CGCCaUGGagCCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 54827 0.66 0.703013
Target:  5'- cGCGUCAuACGCGGgcaggGCUagcugCcGGCGCCGc -3'
miRNA:   3'- -CGCGGU-UGCGCCa----UGGa----GcCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 101573 0.66 0.703013
Target:  5'- uGCGCuCGGCGCGcGccgugGCCUCcGcGcGCGCCGc -3'
miRNA:   3'- -CGCG-GUUGCGC-Ca----UGGAG-C-C-CGCGGU- -5'
23621 5' -61 NC_005261.1 + 51966 0.66 0.703013
Target:  5'- aCGCCGcCGCGcUGCUggacCGcGGCGCCGc -3'
miRNA:   3'- cGCGGUuGCGCcAUGGa---GC-CCGCGGU- -5'
23621 5' -61 NC_005261.1 + 134963 0.66 0.699119
Target:  5'- gGCGCCGGCGacgcagacggcgaGGacgggGCCgccgGGGCGCCc -3'
miRNA:   3'- -CGCGGUUGCg------------CCa----UGGag--CCCGCGGu -5'
23621 5' -61 NC_005261.1 + 91721 0.66 0.693262
Target:  5'- -gGCCGGCucgccGCGGcggGCUUCGcGGCGCUc -3'
miRNA:   3'- cgCGGUUG-----CGCCa--UGGAGC-CCGCGGu -5'
23621 5' -61 NC_005261.1 + 94594 0.66 0.693262
Target:  5'- cGCGCCcuccgcccacgAGCGCGcgcCCUCGccgccgccGGCGCCGu -3'
miRNA:   3'- -CGCGG-----------UUGCGCcauGGAGC--------CCGCGGU- -5'
23621 5' -61 NC_005261.1 + 59387 0.66 0.693262
Target:  5'- cGCGCCAcgGCGCcGaGCC-CGGGCucGCCn -3'
miRNA:   3'- -CGCGGU--UGCGcCaUGGaGCCCG--CGGu -5'
23621 5' -61 NC_005261.1 + 101775 0.66 0.693262
Target:  5'- cGCcuCCAGCGCGcGUGCCgcccggCGGG-GCUg -3'
miRNA:   3'- -CGc-GGUUGCGC-CAUGGa-----GCCCgCGGu -5'
23621 5' -61 NC_005261.1 + 56583 0.66 0.693262
Target:  5'- gGCGacgaCGGCGCGG-ACCcccCGcGCGCCAa -3'
miRNA:   3'- -CGCg---GUUGCGCCaUGGa--GCcCGCGGU- -5'
23621 5' -61 NC_005261.1 + 120662 0.66 0.693262
Target:  5'- gGCGCgGGCGCGccugugAUCUCGcGcGCGCCc -3'
miRNA:   3'- -CGCGgUUGCGCca----UGGAGC-C-CGCGGu -5'
23621 5' -61 NC_005261.1 + 79825 0.66 0.693262
Target:  5'- cGCGgCGGCGCGGcgGCCagCGcaGCGCUAg -3'
miRNA:   3'- -CGCgGUUGCGCCa-UGGa-GCc-CGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.