miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23647 3' -56 NC_005261.1 + 106043 0.66 0.899954
Target:  5'- -aCCGCGCUGcccggcccUAGCG-CCGCGUCGu -3'
miRNA:   3'- caGGCGCGGCau------AUUGUaGGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 21105 0.66 0.899954
Target:  5'- -aCCGCGCCGg--GACAUCaUGUacuGCCc -3'
miRNA:   3'- caGGCGCGGCauaUUGUAG-GCG---CGGu -5'
23647 3' -56 NC_005261.1 + 101855 0.66 0.899954
Target:  5'- -cCCGCcgGCCGccUGcagcACGUCCGCGCgCAg -3'
miRNA:   3'- caGGCG--CGGCauAU----UGUAGGCGCG-GU- -5'
23647 3' -56 NC_005261.1 + 85234 0.66 0.893378
Target:  5'- -gCCGCGCCG----GCAUCUgguuGCGCUg -3'
miRNA:   3'- caGGCGCGGCauauUGUAGG----CGCGGu -5'
23647 3' -56 NC_005261.1 + 21377 0.66 0.893378
Target:  5'- -aCCGCGCCGgaggcgcgGuccacuuugaguGCGUucCCGCGCCGc -3'
miRNA:   3'- caGGCGCGGCaua-----U------------UGUA--GGCGCGGU- -5'
23647 3' -56 NC_005261.1 + 3340 0.66 0.893378
Target:  5'- -cCCGCGCCGc--GGCGcCCggcGCGCCGg -3'
miRNA:   3'- caGGCGCGGCauaUUGUaGG---CGCGGU- -5'
23647 3' -56 NC_005261.1 + 76363 0.66 0.893378
Target:  5'- -cCCGCGCgCGcgu-GCAcCCGCGCUg -3'
miRNA:   3'- caGGCGCG-GCauauUGUaGGCGCGGu -5'
23647 3' -56 NC_005261.1 + 130728 0.66 0.893378
Target:  5'- cUUCGCGCUGccgccgacAUGAUcgCCGCGCUg -3'
miRNA:   3'- cAGGCGCGGCa-------UAUUGuaGGCGCGGu -5'
23647 3' -56 NC_005261.1 + 50800 0.66 0.893378
Target:  5'- -cCCgGCGCCGccgccAUGACGggcUCCGCGCg- -3'
miRNA:   3'- caGG-CGCGGCa----UAUUGU---AGGCGCGgu -5'
23647 3' -56 NC_005261.1 + 83483 0.66 0.893378
Target:  5'- cGUCuCGcCGCCGUAgAGCGccaggcgCgCGCGCCGg -3'
miRNA:   3'- -CAG-GC-GCGGCAUaUUGUa------G-GCGCGGU- -5'
23647 3' -56 NC_005261.1 + 107046 0.66 0.893378
Target:  5'- --aCGCGCCGcGUAcaccgccaGCAUCUGCuGCCc -3'
miRNA:   3'- cagGCGCGGCaUAU--------UGUAGGCG-CGGu -5'
23647 3' -56 NC_005261.1 + 37760 0.66 0.893378
Target:  5'- -gCCGCGCCGcccaAGCG-CCgGCGCCc -3'
miRNA:   3'- caGGCGCGGCaua-UUGUaGG-CGCGGu -5'
23647 3' -56 NC_005261.1 + 86090 0.66 0.893378
Target:  5'- cUCCGCG-CGUucu-CGUCgGCGCCc -3'
miRNA:   3'- cAGGCGCgGCAuauuGUAGgCGCGGu -5'
23647 3' -56 NC_005261.1 + 129804 0.66 0.88657
Target:  5'- cUCCGCGCUc----GCGcCCGCGCCc -3'
miRNA:   3'- cAGGCGCGGcauauUGUaGGCGCGGu -5'
23647 3' -56 NC_005261.1 + 100063 0.66 0.88657
Target:  5'- -gCCGcCGCCGcccgggGGCGcgCCGCGCCc -3'
miRNA:   3'- caGGC-GCGGCaua---UUGUa-GGCGCGGu -5'
23647 3' -56 NC_005261.1 + 104021 0.66 0.88657
Target:  5'- --gCGCGCUGUAcuGCGcgCCGCGCa- -3'
miRNA:   3'- cagGCGCGGCAUauUGUa-GGCGCGgu -5'
23647 3' -56 NC_005261.1 + 73454 0.66 0.88657
Target:  5'- -gCCGCGUCc----GCGUCCGCGCg- -3'
miRNA:   3'- caGGCGCGGcauauUGUAGGCGCGgu -5'
23647 3' -56 NC_005261.1 + 124240 0.66 0.88657
Target:  5'- -aCCGcCGCCGcg-GGCAggcgCCGCGCg- -3'
miRNA:   3'- caGGC-GCGGCauaUUGUa---GGCGCGgu -5'
23647 3' -56 NC_005261.1 + 32595 0.66 0.883783
Target:  5'- cUCCGCGUCcuccucguCGUCCGCGUCc -3'
miRNA:   3'- cAGGCGCGGcauauu--GUAGGCGCGGu -5'
23647 3' -56 NC_005261.1 + 104729 0.66 0.879534
Target:  5'- --gCGCGUCGUGccGCGUgCgCGCGCCGu -3'
miRNA:   3'- cagGCGCGGCAUauUGUA-G-GCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.