miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23651 3' -57.3 NC_005261.1 + 56003 0.66 0.850924
Target:  5'- -cGCggCGGGGGCGGGGgcgGGGaagACGc -3'
miRNA:   3'- caCGa-GCCCUUGCUCCa--CCCgcaUGU- -5'
23651 3' -57.3 NC_005261.1 + 57188 0.66 0.842942
Target:  5'- -gGUcggCGGGAAgGGGGggggGGGCGcGCGg -3'
miRNA:   3'- caCGa--GCCCUUgCUCCa---CCCGCaUGU- -5'
23651 3' -57.3 NC_005261.1 + 50628 0.66 0.842942
Target:  5'- gGUGCUccacgCGGGcGGCGGGGUGGcGCcgGCGa -3'
miRNA:   3'- -CACGA-----GCCC-UUGCUCCACC-CGcaUGU- -5'
23651 3' -57.3 NC_005261.1 + 30577 0.66 0.842942
Target:  5'- -cGgaCGGGGACGGGGacgGGGaCGgggACGg -3'
miRNA:   3'- caCgaGCCCUUGCUCCa--CCC-GCa--UGU- -5'
23651 3' -57.3 NC_005261.1 + 96863 0.66 0.826414
Target:  5'- -gGCUCgGGGGGCGcGGGUa-GCGUGCGg -3'
miRNA:   3'- caCGAG-CCCUUGC-UCCAccCGCAUGU- -5'
23651 3' -57.3 NC_005261.1 + 16177 0.66 0.826414
Target:  5'- -gGCgCGGGcguGGCgGGGGUGGGCGgggGCc -3'
miRNA:   3'- caCGaGCCC---UUG-CUCCACCCGCa--UGu -5'
23651 3' -57.3 NC_005261.1 + 78412 0.66 0.826414
Target:  5'- cGUGCUCuguGGGcGAUGGGGgGGGCGa--- -3'
miRNA:   3'- -CACGAG---CCC-UUGCUCCaCCCGCaugu -5'
23651 3' -57.3 NC_005261.1 + 27246 0.66 0.817881
Target:  5'- -cGCcUGGGGugGGGcG-GGGUGUGCGg -3'
miRNA:   3'- caCGaGCCCUugCUC-CaCCCGCAUGU- -5'
23651 3' -57.3 NC_005261.1 + 24278 0.67 0.809181
Target:  5'- -gGCUUGcccGGGugGGGGUGGGgGgcCAg -3'
miRNA:   3'- caCGAGC---CCUugCUCCACCCgCauGU- -5'
23651 3' -57.3 NC_005261.1 + 15154 0.67 0.80032
Target:  5'- -cGUcCGcGGugGGGGUGGGCGUAg- -3'
miRNA:   3'- caCGaGCcCUugCUCCACCCGCAUgu -5'
23651 3' -57.3 NC_005261.1 + 95156 0.67 0.80032
Target:  5'- -cGC-CGGGAaccugcagugcgGCGAGG-GGGaCGUGCc -3'
miRNA:   3'- caCGaGCCCU------------UGCUCCaCCC-GCAUGu -5'
23651 3' -57.3 NC_005261.1 + 68595 0.67 0.782152
Target:  5'- -gGCcgCGGGAGCGGGGccgacGGCGUGgGg -3'
miRNA:   3'- caCGa-GCCCUUGCUCCac---CCGCAUgU- -5'
23651 3' -57.3 NC_005261.1 + 43770 0.67 0.763447
Target:  5'- gGUGCUCGuGGGGCGGcgcgcGGaGGGCGccGCGg -3'
miRNA:   3'- -CACGAGC-CCUUGCU-----CCaCCCGCa-UGU- -5'
23651 3' -57.3 NC_005261.1 + 24012 0.67 0.762499
Target:  5'- cUGCUaggggaGGGGGCGgagcgcgggguucGGGUGGGCGUc-- -3'
miRNA:   3'- cACGAg-----CCCUUGC-------------UCCACCCGCAugu -5'
23651 3' -57.3 NC_005261.1 + 42985 0.68 0.753916
Target:  5'- cUGCUgGGGGAgcugggcuacacCGAGGgccaGGGCGUguACAg -3'
miRNA:   3'- cACGAgCCCUU------------GCUCCa---CCCGCA--UGU- -5'
23651 3' -57.3 NC_005261.1 + 72068 0.68 0.751035
Target:  5'- -gGCUCGGcAccaggucguaguccACGAGGUGGcGCGUcuGCAg -3'
miRNA:   3'- caCGAGCCcU--------------UGCUCCACC-CGCA--UGU- -5'
23651 3' -57.3 NC_005261.1 + 69314 0.68 0.724715
Target:  5'- -gGCggCGGGAGCGGGGgugacGGCG-ACAg -3'
miRNA:   3'- caCGa-GCCCUUGCUCCac---CCGCaUGU- -5'
23651 3' -57.3 NC_005261.1 + 24126 0.68 0.714811
Target:  5'- -gGCgggggUGGGGGCuGGGUGGGCGggGCu -3'
miRNA:   3'- caCGa----GCCCUUGcUCCACCCGCa-UGu -5'
23651 3' -57.3 NC_005261.1 + 98494 0.69 0.6948
Target:  5'- -gGCUCGGGcGgGuaAGGUGccGGCGUACGg -3'
miRNA:   3'- caCGAGCCCuUgC--UCCAC--CCGCAUGU- -5'
23651 3' -57.3 NC_005261.1 + 119708 0.69 0.6948
Target:  5'- -cGCgCGGcGAUGAGGaGGGCGUGCc -3'
miRNA:   3'- caCGaGCCcUUGCUCCaCCCGCAUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.