Results 1 - 20 of 358 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23658 | 5' | -58.1 | NC_005261.1 | + | 104124 | 0.66 | 0.854401 |
Target: 5'- cGCGCGGuuCGCCGcGAGCucGGCCGccaGGu -3' miRNA: 3'- -CGCGCUu-GCGGCcUUCGc-UCGGCa--CC- -5' |
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23658 | 5' | -58.1 | NC_005261.1 | + | 64887 | 0.79 | 0.22203 |
Target: 5'- gGCGgGAGCGCCGGGuccAGC-AGCgCGUGGu -3' miRNA: 3'- -CGCgCUUGCGGCCU---UCGcUCG-GCACC- -5' |
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23658 | 5' | -58.1 | NC_005261.1 | + | 82615 | 0.78 | 0.227392 |
Target: 5'- cGCGUGAGcCGCCGGAucAGCGAGgCCGacaugUGGu -3' miRNA: 3'- -CGCGCUU-GCGGCCU--UCGCUC-GGC-----ACC- -5' |
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23658 | 5' | -58.1 | NC_005261.1 | + | 127736 | 0.78 | 0.244136 |
Target: 5'- aGCGgGAgcuugGCGgCGGGAGCGGGCCGcGGc -3' miRNA: 3'- -CGCgCU-----UGCgGCCUUCGCUCGGCaCC- -5' |
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23658 | 5' | -58.1 | NC_005261.1 | + | 15029 | 0.78 | 0.249941 |
Target: 5'- -gGCGggUGCCGGggGCGuAGCgGgggGGg -3' miRNA: 3'- cgCGCuuGCGGCCuuCGC-UCGgCa--CC- -5' |
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23658 | 5' | -58.1 | NC_005261.1 | + | 16177 | 0.77 | 0.268041 |
Target: 5'- gGCGCGGGCGUggCGGggGUGGGCgG-GGg -3' miRNA: 3'- -CGCGCUUGCG--GCCuuCGCUCGgCaCC- -5' |
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23658 | 5' | -58.1 | NC_005261.1 | + | 113550 | 0.77 | 0.280686 |
Target: 5'- cGUGCGcGCGCUGGAccGCGAGCaGUGGu -3' miRNA: 3'- -CGCGCuUGCGGCCUu-CGCUCGgCACC- -5' |
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23658 | 5' | -58.1 | NC_005261.1 | + | 44879 | 0.77 | 0.287184 |
Target: 5'- cCGCGAGCGCCGcGggGauGGCCG-GGg -3' miRNA: 3'- cGCGCUUGCGGC-CuuCgcUCGGCaCC- -5' |
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23658 | 5' | -58.1 | NC_005261.1 | + | 63022 | 0.76 | 0.2938 |
Target: 5'- cGCGCGGGCGCCGGcgcccgcGGCGAGgCGg-- -3' miRNA: 3'- -CGCGCUUGCGGCCu------UCGCUCgGCacc -5' |
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23658 | 5' | -58.1 | NC_005261.1 | + | 69485 | 0.79 | 0.218865 |
Target: 5'- cGCGCGAugcuggugcaccuguACGCCGGcGGCGGGCUGccGGa -3' miRNA: 3'- -CGCGCU---------------UGCGGCCuUCGCUCGGCa-CC- -5' |
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23658 | 5' | -58.1 | NC_005261.1 | + | 132594 | 0.79 | 0.196817 |
Target: 5'- cCGCGGACGcCCGGcccGGCGAGCCGccagGGg -3' miRNA: 3'- cGCGCUUGC-GGCCu--UCGCUCGGCa---CC- -5' |
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23658 | 5' | -58.1 | NC_005261.1 | + | 13688 | 0.8 | 0.192084 |
Target: 5'- cGCGCGGGCGUgGGGcggGGCGGGCUGgGGg -3' miRNA: 3'- -CGCGCUUGCGgCCU---UCGCUCGGCaCC- -5' |
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23658 | 5' | -58.1 | NC_005261.1 | + | 34294 | 0.88 | 0.051952 |
Target: 5'- gGCGgGGACGCCGGGAGCGAGaCCGacgGGg -3' miRNA: 3'- -CGCgCUUGCGGCCUUCGCUC-GGCa--CC- -5' |
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23658 | 5' | -58.1 | NC_005261.1 | + | 75501 | 0.87 | 0.060867 |
Target: 5'- aGCGCgGGGCGCUGGAGGCGcacGCCGUGGu -3' miRNA: 3'- -CGCG-CUUGCGGCCUUCGCu--CGGCACC- -5' |
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23658 | 5' | -58.1 | NC_005261.1 | + | 69000 | 0.86 | 0.078895 |
Target: 5'- cGCGCGGGCGCCGcGGcuucguuGGCGAGuCCGUGGc -3' miRNA: 3'- -CGCGCUUGCGGC-CU-------UCGCUC-GGCACC- -5' |
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23658 | 5' | -58.1 | NC_005261.1 | + | 28584 | 0.84 | 0.100922 |
Target: 5'- cGCGCGAGCGCCGGcgggccgcccgcgccGAGCuggcgGAGCUGUGGc -3' miRNA: 3'- -CGCGCUUGCGGCC---------------UUCG-----CUCGGCACC- -5' |
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23658 | 5' | -58.1 | NC_005261.1 | + | 56110 | 0.83 | 0.107896 |
Target: 5'- uGCGCGAGCGgCGGGAGCGcGCCGcagGGc -3' miRNA: 3'- -CGCGCUUGCgGCCUUCGCuCGGCa--CC- -5' |
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23658 | 5' | -58.1 | NC_005261.1 | + | 120930 | 0.82 | 0.139138 |
Target: 5'- cCGCGAGCGCCGGgcGCGGGaagGUGGa -3' miRNA: 3'- cGCGCUUGCGGCCuuCGCUCgg-CACC- -5' |
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23658 | 5' | -58.1 | NC_005261.1 | + | 69757 | 0.81 | 0.165739 |
Target: 5'- -gGCGAGCGCgGGggGCGGcGCCG-GGg -3' miRNA: 3'- cgCGCUUGCGgCCuuCGCU-CGGCaCC- -5' |
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23658 | 5' | -58.1 | NC_005261.1 | + | 68575 | 0.81 | 0.165739 |
Target: 5'- aGCGCGu-CGCCGccGAGGCGGGCCGcGGg -3' miRNA: 3'- -CGCGCuuGCGGC--CUUCGCUCGGCaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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