miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23659 5' -57 NC_005261.1 + 104713 0.68 0.738587
Target:  5'- -gGCUGgacgGCCGAGggcgCGUcGUGCCGCGUg -3'
miRNA:   3'- caUGACg---CGGCUUa---GCA-CGCGGCGUA- -5'
23659 5' -57 NC_005261.1 + 104411 0.74 0.393684
Target:  5'- -aGC-GCGCCGAAaCG-GCGCCGCAc -3'
miRNA:   3'- caUGaCGCGGCUUaGCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 104160 0.69 0.657283
Target:  5'- -cACcGCGCCGuccgCGgGCGCCGCGc -3'
miRNA:   3'- caUGaCGCGGCuua-GCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 102949 0.68 0.738587
Target:  5'- -cGCUGCGgCGGcggccgCGgGCGCCGCGg -3'
miRNA:   3'- caUGACGCgGCUua----GCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 102466 0.68 0.718641
Target:  5'- -cGCgcagGCGCCGGAccuccUCGgcGCGCCGCc- -3'
miRNA:   3'- caUGa---CGCGGCUU-----AGCa-CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 102284 0.67 0.777259
Target:  5'- cUGCcGCGCCagcggccgcGggUCGUagccgcGCGCCGCGg -3'
miRNA:   3'- cAUGaCGCGG---------CuuAGCA------CGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 101632 0.68 0.738587
Target:  5'- ----cGCGCCGcggccgCGUcGCGCCGCAc -3'
miRNA:   3'- caugaCGCGGCuua---GCA-CGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 95784 0.7 0.59516
Target:  5'- -cGCUGCGCCGGcgCGcugcuagccgGCGCCgGCGg -3'
miRNA:   3'- caUGACGCGGCUuaGCa---------CGCGG-CGUa -5'
23659 5' -57 NC_005261.1 + 94629 0.67 0.777259
Target:  5'- -cGCcgGCGCCGucGUCG-GCGCgCGCGa -3'
miRNA:   3'- caUGa-CGCGGCu-UAGCaCGCG-GCGUa -5'
23659 5' -57 NC_005261.1 + 93930 0.68 0.688177
Target:  5'- -gGCuUGCGCCGuccgCGgGCGCCGCc- -3'
miRNA:   3'- caUG-ACGCGGCuua-GCaCGCGGCGua -5'
23659 5' -57 NC_005261.1 + 91099 0.67 0.777259
Target:  5'- cGUGCUcaugcacgacGaCGCCGucUCGcGCGCCGCGg -3'
miRNA:   3'- -CAUGA----------C-GCGGCuuAGCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 90111 0.67 0.748421
Target:  5'- -gGCUGgGCCGAcgCG-GC-CCGCGg -3'
miRNA:   3'- caUGACgCGGCUuaGCaCGcGGCGUa -5'
23659 5' -57 NC_005261.1 + 88607 0.66 0.839463
Target:  5'- -gGCgGCGCCacGGUCGUGaCGCUGCu- -3'
miRNA:   3'- caUGaCGCGGc-UUAGCAC-GCGGCGua -5'
23659 5' -57 NC_005261.1 + 88481 0.73 0.447074
Target:  5'- cGUGCcGCGCCGGAgc--GCGCCGCGc -3'
miRNA:   3'- -CAUGaCGCGGCUUagcaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 87432 0.66 0.813801
Target:  5'- -gGCgaagGCGCCGAAgcCGaaGCGCCGCc- -3'
miRNA:   3'- caUGa---CGCGGCUUa-GCa-CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 86593 0.67 0.795833
Target:  5'- -gGCgGCGCCGuccuuggcGUCGgccGCGCCGCc- -3'
miRNA:   3'- caUGaCGCGGCu-------UAGCa--CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 86235 0.71 0.564367
Target:  5'- gGUGCcGCaGCCGAugcagcGUCGUGUGCgCGCAc -3'
miRNA:   3'- -CAUGaCG-CGGCU------UAGCACGCG-GCGUa -5'
23659 5' -57 NC_005261.1 + 85991 0.78 0.219129
Target:  5'- -aGCUGCGCCGccgacggggcGUCGUGCGCCaGCAg -3'
miRNA:   3'- caUGACGCGGCu---------UAGCACGCGG-CGUa -5'
23659 5' -57 NC_005261.1 + 85559 0.71 0.54407
Target:  5'- cUGCgGCGCCGcgagguUCG-GCGCCGCGa -3'
miRNA:   3'- cAUGaCGCGGCuu----AGCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 85233 0.67 0.758151
Target:  5'- -aGCcGCGCCGGcAUCugguUGCGCUGCAg -3'
miRNA:   3'- caUGaCGCGGCU-UAGc---ACGCGGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.