miRNA display CGI


Results 1 - 20 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 3' -58.7 NC_005261.1 + 42607 0.66 0.766199
Target:  5'- -aGGCaGCUCGCGCG-GCgcaaaguccaGCGGGGaCUc -3'
miRNA:   3'- caUUGaCGAGCGCGUaCG----------CGCCCC-GA- -5'
23667 3' -58.7 NC_005261.1 + 80059 0.66 0.766199
Target:  5'- cUGGCgGCggGCGCGggggGCGUGGGGg- -3'
miRNA:   3'- cAUUGaCGagCGCGUa---CGCGCCCCga -5'
23667 3' -58.7 NC_005261.1 + 15492 0.66 0.766199
Target:  5'- --cGCcGCUCGCuGCGg--GCGGGGCg -3'
miRNA:   3'- cauUGaCGAGCG-CGUacgCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 95537 0.66 0.766199
Target:  5'- -gAGCUGCUucgUGCGCAUGCcGCGcGuGCa -3'
miRNA:   3'- caUUGACGA---GCGCGUACG-CGCcC-CGa -5'
23667 3' -58.7 NC_005261.1 + 20833 0.66 0.756674
Target:  5'- -gAACUGCgcguUCGCGgGggcaGCGUGGcGGCUc -3'
miRNA:   3'- caUUGACG----AGCGCgUa---CGCGCC-CCGA- -5'
23667 3' -58.7 NC_005261.1 + 75478 0.66 0.756674
Target:  5'- -gGGCgGCg-GCGCGggccgcuacgaGCGCGGGGCg -3'
miRNA:   3'- caUUGaCGagCGCGUa----------CGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 129727 0.66 0.756674
Target:  5'- -cGGCUGCagCG-GCAggGCgGCGGGGCc -3'
miRNA:   3'- caUUGACGa-GCgCGUa-CG-CGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 30236 0.66 0.750905
Target:  5'- cGUGGCcccGCUgGCGCGguacucgacgcgcgGCGCGGcGGCc -3'
miRNA:   3'- -CAUUGa--CGAgCGCGUa-------------CGCGCC-CCGa -5'
23667 3' -58.7 NC_005261.1 + 56115 0.66 0.747038
Target:  5'- -gAGCgGCgggagCGCGCcgcaggGCGgGGGGCg -3'
miRNA:   3'- caUUGaCGa----GCGCGua----CGCgCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 77668 0.66 0.747038
Target:  5'- ---cCUGCagGCGCAggGCGCGgacgggccGGGCUa -3'
miRNA:   3'- cauuGACGagCGCGUa-CGCGC--------CCCGA- -5'
23667 3' -58.7 NC_005261.1 + 114253 0.66 0.747038
Target:  5'- -cAGCUGCUgcucuuuaaaaaCGaCGCGguggcGCGCGcGGGCUa -3'
miRNA:   3'- caUUGACGA------------GC-GCGUa----CGCGC-CCCGA- -5'
23667 3' -58.7 NC_005261.1 + 20557 0.66 0.747038
Target:  5'- cGUGGCggcggGCU-GCGCAgcgGCGCcGGcGGCg -3'
miRNA:   3'- -CAUUGa----CGAgCGCGUa--CGCG-CC-CCGa -5'
23667 3' -58.7 NC_005261.1 + 46484 0.66 0.747038
Target:  5'- --uGCaGCUCgGCGCccucCGCGGGGCg -3'
miRNA:   3'- cauUGaCGAG-CGCGuac-GCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 125517 0.66 0.746068
Target:  5'- aGUGGCUuuuauacGCUCGCGCcgccCGCaGGGCg -3'
miRNA:   3'- -CAUUGA-------CGAGCGCGuac-GCGcCCCGa -5'
23667 3' -58.7 NC_005261.1 + 38208 0.66 0.741207
Target:  5'- cGUGcuGCUGCUcaacaccucgcucacCGUGCGga-GCGGGGCg -3'
miRNA:   3'- -CAU--UGACGA---------------GCGCGUacgCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 113121 0.66 0.737301
Target:  5'- -gGACaUGCUCuCGCccgccGCGCGGcGGCUg -3'
miRNA:   3'- caUUG-ACGAGcGCGua---CGCGCC-CCGA- -5'
23667 3' -58.7 NC_005261.1 + 31510 0.66 0.737301
Target:  5'- ---cCUGCUCGCG---GCGCuGGGCa -3'
miRNA:   3'- cauuGACGAGCGCguaCGCGcCCCGa -5'
23667 3' -58.7 NC_005261.1 + 70971 0.66 0.727472
Target:  5'- -cGACgGCgaagaagaGCGCGUgGCGCGcGGGCg -3'
miRNA:   3'- caUUGaCGag------CGCGUA-CGCGC-CCCGa -5'
23667 3' -58.7 NC_005261.1 + 72955 0.66 0.727472
Target:  5'- cGgcACcgGCUCGCGCccGCcgccGCGGGGg- -3'
miRNA:   3'- -CauUGa-CGAGCGCGuaCG----CGCCCCga -5'
23667 3' -58.7 NC_005261.1 + 69786 0.66 0.727472
Target:  5'- -gAGCcGCUCcCGCGgcGCGCGGcGGCg -3'
miRNA:   3'- caUUGaCGAGcGCGUa-CGCGCC-CCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.