Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 42607 | 0.66 | 0.766199 |
Target: 5'- -aGGCaGCUCGCGCG-GCgcaaaguccaGCGGGGaCUc -3' miRNA: 3'- caUUGaCGAGCGCGUaCG----------CGCCCC-GA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 80059 | 0.66 | 0.766199 |
Target: 5'- cUGGCgGCggGCGCGggggGCGUGGGGg- -3' miRNA: 3'- cAUUGaCGagCGCGUa---CGCGCCCCga -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 15492 | 0.66 | 0.766199 |
Target: 5'- --cGCcGCUCGCuGCGg--GCGGGGCg -3' miRNA: 3'- cauUGaCGAGCG-CGUacgCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 95537 | 0.66 | 0.766199 |
Target: 5'- -gAGCUGCUucgUGCGCAUGCcGCGcGuGCa -3' miRNA: 3'- caUUGACGA---GCGCGUACG-CGCcC-CGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 20833 | 0.66 | 0.756674 |
Target: 5'- -gAACUGCgcguUCGCGgGggcaGCGUGGcGGCUc -3' miRNA: 3'- caUUGACG----AGCGCgUa---CGCGCC-CCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 75478 | 0.66 | 0.756674 |
Target: 5'- -gGGCgGCg-GCGCGggccgcuacgaGCGCGGGGCg -3' miRNA: 3'- caUUGaCGagCGCGUa----------CGCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 129727 | 0.66 | 0.756674 |
Target: 5'- -cGGCUGCagCG-GCAggGCgGCGGGGCc -3' miRNA: 3'- caUUGACGa-GCgCGUa-CG-CGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 30236 | 0.66 | 0.750905 |
Target: 5'- cGUGGCcccGCUgGCGCGguacucgacgcgcgGCGCGGcGGCc -3' miRNA: 3'- -CAUUGa--CGAgCGCGUa-------------CGCGCC-CCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 56115 | 0.66 | 0.747038 |
Target: 5'- -gAGCgGCgggagCGCGCcgcaggGCGgGGGGCg -3' miRNA: 3'- caUUGaCGa----GCGCGua----CGCgCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 77668 | 0.66 | 0.747038 |
Target: 5'- ---cCUGCagGCGCAggGCGCGgacgggccGGGCUa -3' miRNA: 3'- cauuGACGagCGCGUa-CGCGC--------CCCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 114253 | 0.66 | 0.747038 |
Target: 5'- -cAGCUGCUgcucuuuaaaaaCGaCGCGguggcGCGCGcGGGCUa -3' miRNA: 3'- caUUGACGA------------GC-GCGUa----CGCGC-CCCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 20557 | 0.66 | 0.747038 |
Target: 5'- cGUGGCggcggGCU-GCGCAgcgGCGCcGGcGGCg -3' miRNA: 3'- -CAUUGa----CGAgCGCGUa--CGCG-CC-CCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 46484 | 0.66 | 0.747038 |
Target: 5'- --uGCaGCUCgGCGCccucCGCGGGGCg -3' miRNA: 3'- cauUGaCGAG-CGCGuac-GCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 125517 | 0.66 | 0.746068 |
Target: 5'- aGUGGCUuuuauacGCUCGCGCcgccCGCaGGGCg -3' miRNA: 3'- -CAUUGA-------CGAGCGCGuac-GCGcCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 38208 | 0.66 | 0.741207 |
Target: 5'- cGUGcuGCUGCUcaacaccucgcucacCGUGCGga-GCGGGGCg -3' miRNA: 3'- -CAU--UGACGA---------------GCGCGUacgCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 113121 | 0.66 | 0.737301 |
Target: 5'- -gGACaUGCUCuCGCccgccGCGCGGcGGCUg -3' miRNA: 3'- caUUG-ACGAGcGCGua---CGCGCC-CCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 31510 | 0.66 | 0.737301 |
Target: 5'- ---cCUGCUCGCG---GCGCuGGGCa -3' miRNA: 3'- cauuGACGAGCGCguaCGCGcCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 70971 | 0.66 | 0.727472 |
Target: 5'- -cGACgGCgaagaagaGCGCGUgGCGCGcGGGCg -3' miRNA: 3'- caUUGaCGag------CGCGUA-CGCGC-CCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 72955 | 0.66 | 0.727472 |
Target: 5'- cGgcACcgGCUCGCGCccGCcgccGCGGGGg- -3' miRNA: 3'- -CauUGa-CGAGCGCGuaCG----CGCCCCga -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 69786 | 0.66 | 0.727472 |
Target: 5'- -gAGCcGCUCcCGCGgcGCGCGGcGGCg -3' miRNA: 3'- caUUGaCGAGcGCGUa-CGCGCC-CCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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