miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23670 3' -57 NC_005261.1 + 43861 0.66 0.87494
Target:  5'- --gCGGCCgcGUCGUCcUCGGCGGCGc -3'
miRNA:   3'- gagGCUGGauCGGCGGuAGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 31190 0.66 0.87494
Target:  5'- --gCGGCCUAcuGCCGCCccgagGUCG-CGGCGc -3'
miRNA:   3'- gagGCUGGAU--CGGCGG-----UAGCuGCUGU- -5'
23670 3' -57 NC_005261.1 + 102608 0.66 0.87494
Target:  5'- uUCCGcguCCUcGCCGCCAgcggccUCGGCcGCGg -3'
miRNA:   3'- gAGGCu--GGAuCGGCGGU------AGCUGcUGU- -5'
23670 3' -57 NC_005261.1 + 84656 0.66 0.87494
Target:  5'- -cCCGGCUggcGCCGCCcgCGcccGCGGCc -3'
miRNA:   3'- gaGGCUGGau-CGGCGGuaGC---UGCUGu -5'
23670 3' -57 NC_005261.1 + 89841 0.66 0.87494
Target:  5'- -gCCgGGCCggagGGCCGCggcguCAUCGGCGAg- -3'
miRNA:   3'- gaGG-CUGGa---UCGGCG-----GUAGCUGCUgu -5'
23670 3' -57 NC_005261.1 + 128862 0.66 0.87494
Target:  5'- -cCCG-CCUcGUCGCUGcCGACGACGa -3'
miRNA:   3'- gaGGCuGGAuCGGCGGUaGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 90654 0.66 0.87494
Target:  5'- -cCCuGCCUGGCCGUCGcggccaccgUGACGACc -3'
miRNA:   3'- gaGGcUGGAUCGGCGGUa--------GCUGCUGu -5'
23670 3' -57 NC_005261.1 + 56802 0.66 0.872773
Target:  5'- uUCCGGCagcgGGCCacgguguuccugguGCCG-CGGCGGCAc -3'
miRNA:   3'- gAGGCUGga--UCGG--------------CGGUaGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 15579 0.66 0.870588
Target:  5'- -gUCG-CCUguagcaugacgaagcAGUCGCCGUCGACGAg- -3'
miRNA:   3'- gaGGCuGGA---------------UCGGCGGUAGCUGCUgu -5'
23670 3' -57 NC_005261.1 + 82057 0.66 0.867645
Target:  5'- -gCgGGCCacGUCGCCggGUCGACGGCGu -3'
miRNA:   3'- gaGgCUGGauCGGCGG--UAGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 132012 0.66 0.867645
Target:  5'- --gCGACaacugGGCCGCCGUCacgGACGugGc -3'
miRNA:   3'- gagGCUGga---UCGGCGGUAG---CUGCugU- -5'
23670 3' -57 NC_005261.1 + 43148 0.66 0.867645
Target:  5'- --gCGGCCUGcgcGCCGCCGacaUCG-CGGCGc -3'
miRNA:   3'- gagGCUGGAU---CGGCGGU---AGCuGCUGU- -5'
23670 3' -57 NC_005261.1 + 104513 0.66 0.867645
Target:  5'- gCUCCG---UGGCgGCCG-CGACGGCGg -3'
miRNA:   3'- -GAGGCuggAUCGgCGGUaGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 133139 0.66 0.860141
Target:  5'- uCUCCcugcgGugCgcgcucGCCGCCGUCGGCGuCGc -3'
miRNA:   3'- -GAGG-----CugGau----CGGCGGUAGCUGCuGU- -5'
23670 3' -57 NC_005261.1 + 133798 0.66 0.860141
Target:  5'- aUCCcGCCcgGGCUGCuCGaCGGCGACGa -3'
miRNA:   3'- gAGGcUGGa-UCGGCG-GUaGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 95016 0.66 0.860141
Target:  5'- -gCgGGCUauaaAGCCGCCGcCGGCGGCGc -3'
miRNA:   3'- gaGgCUGGa---UCGGCGGUaGCUGCUGU- -5'
23670 3' -57 NC_005261.1 + 86611 0.66 0.860141
Target:  5'- -gUCGGCCgcGCCGCCGUCGuCcACc -3'
miRNA:   3'- gaGGCUGGauCGGCGGUAGCuGcUGu -5'
23670 3' -57 NC_005261.1 + 10776 0.66 0.860141
Target:  5'- -gUCGuCCUcGUCGUCAUCGACGuCAu -3'
miRNA:   3'- gaGGCuGGAuCGGCGGUAGCUGCuGU- -5'
23670 3' -57 NC_005261.1 + 27635 0.66 0.860141
Target:  5'- -aCCGuuGCUUGccGCCGCCGUCGG-GACGa -3'
miRNA:   3'- gaGGC--UGGAU--CGGCGGUAGCUgCUGU- -5'
23670 3' -57 NC_005261.1 + 15376 0.66 0.860141
Target:  5'- gCUCgGcGCCcucggcGCCGCCGUCGAugcCGACGc -3'
miRNA:   3'- -GAGgC-UGGau----CGGCGGUAGCU---GCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.