miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23684 3' -60.4 NC_005261.1 + 56602 0.66 0.75141
Target:  5'- cCCCGcgCGCCaagCGcGCGCGCGuggaGCCCc- -3'
miRNA:   3'- -GGGCa-GCGGa--GCuUGUGCGC----CGGGag -5'
23684 3' -60.4 NC_005261.1 + 80040 0.66 0.75141
Target:  5'- gCCGUCGCCgccgUCGccACugGCGGCg--- -3'
miRNA:   3'- gGGCAGCGG----AGCu-UGugCGCCGggag -5'
23684 3' -60.4 NC_005261.1 + 37867 0.66 0.75141
Target:  5'- cCCCGaCGCCUgGcGGCGCGUGcuggaGCCCg- -3'
miRNA:   3'- -GGGCaGCGGAgC-UUGUGCGC-----CGGGag -5'
23684 3' -60.4 NC_005261.1 + 79647 0.66 0.75141
Target:  5'- gCUCGUUGuCCUCGccga-GCuGGCCCUCc -3'
miRNA:   3'- -GGGCAGC-GGAGCuugugCG-CCGGGAG- -5'
23684 3' -60.4 NC_005261.1 + 1683 0.66 0.75141
Target:  5'- gCCCGUCgaGCCgCGGcaGCACGCGcuGCCgguaCUCg -3'
miRNA:   3'- -GGGCAG--CGGaGCU--UGUGCGC--CGG----GAG- -5'
23684 3' -60.4 NC_005261.1 + 83118 0.66 0.75141
Target:  5'- gCCGcCGCCagcCGcGCGCGCGgcacGCCCUg -3'
miRNA:   3'- gGGCaGCGGa--GCuUGUGCGC----CGGGAg -5'
23684 3' -60.4 NC_005261.1 + 99440 0.66 0.75141
Target:  5'- cCCCGUCGgg-CGGAagaGCGCGGgCCg- -3'
miRNA:   3'- -GGGCAGCggaGCUUg--UGCGCCgGGag -5'
23684 3' -60.4 NC_005261.1 + 103403 0.66 0.75141
Target:  5'- gCCUG-CGCCUCcAGCuccGCGCGGgCCg- -3'
miRNA:   3'- -GGGCaGCGGAGcUUG---UGCGCCgGGag -5'
23684 3' -60.4 NC_005261.1 + 39613 0.66 0.75141
Target:  5'- cCCCGcCGCCccCGu-CGCGCaGaCCCUCc -3'
miRNA:   3'- -GGGCaGCGGa-GCuuGUGCGcC-GGGAG- -5'
23684 3' -60.4 NC_005261.1 + 72969 0.66 0.75141
Target:  5'- gCCCGcCGCCgCGGGgguccgcgaGCGCGGCCa-- -3'
miRNA:   3'- -GGGCaGCGGaGCUUg--------UGCGCCGGgag -5'
23684 3' -60.4 NC_005261.1 + 132146 0.66 0.75141
Target:  5'- gCCC-UCcuCCUCGAGCGCGCcGCCgCUg -3'
miRNA:   3'- -GGGcAGc-GGAGCUUGUGCGcCGG-GAg -5'
23684 3' -60.4 NC_005261.1 + 102454 0.66 0.75141
Target:  5'- gCCCG--GCCUCG-GCGCGCaGGCgCCg- -3'
miRNA:   3'- -GGGCagCGGAGCuUGUGCG-CCG-GGag -5'
23684 3' -60.4 NC_005261.1 + 118874 0.66 0.750481
Target:  5'- gCCC-UgGCCUCGGccaccgcgggcgcGCugGUGGCCUg- -3'
miRNA:   3'- -GGGcAgCGGAGCU-------------UGugCGCCGGGag -5'
23684 3' -60.4 NC_005261.1 + 99672 0.66 0.742069
Target:  5'- aCCGUCGUC---AGCGCGCuGCCCg- -3'
miRNA:   3'- gGGCAGCGGagcUUGUGCGcCGGGag -5'
23684 3' -60.4 NC_005261.1 + 92304 0.66 0.742069
Target:  5'- gCCaGgaugagCGCCgcgCGGucCGCGCGGCCCa- -3'
miRNA:   3'- gGG-Ca-----GCGGa--GCUu-GUGCGCCGGGag -5'
23684 3' -60.4 NC_005261.1 + 12561 0.66 0.742069
Target:  5'- cCCCG-CGCCggGcAACGCGgGGCCg-- -3'
miRNA:   3'- -GGGCaGCGGagC-UUGUGCgCCGGgag -5'
23684 3' -60.4 NC_005261.1 + 81326 0.66 0.742069
Target:  5'- gUCGUCGCCgUCGu---CGgGGCCgUCg -3'
miRNA:   3'- gGGCAGCGG-AGCuuguGCgCCGGgAG- -5'
23684 3' -60.4 NC_005261.1 + 38900 0.66 0.742069
Target:  5'- -aCGUCGUccuuCUCcGGCGCGCGGgCCCg- -3'
miRNA:   3'- ggGCAGCG----GAGcUUGUGCGCC-GGGag -5'
23684 3' -60.4 NC_005261.1 + 97560 0.66 0.742069
Target:  5'- gCCCGUcCGCCcgggguuggcUCGGugGCGCGGgCg-- -3'
miRNA:   3'- -GGGCA-GCGG----------AGCUugUGCGCCgGgag -5'
23684 3' -60.4 NC_005261.1 + 45953 0.66 0.742069
Target:  5'- gCCGccagggCGCCgUUGAGCAUGCGcGCCagCUCu -3'
miRNA:   3'- gGGCa-----GCGG-AGCUUGUGCGC-CGG--GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.