miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23686 3' -55.4 NC_005261.1 + 11291 0.66 0.938762
Target:  5'- cCGuUCGcGCGucGCAGGGGagGUgGGGa -3'
miRNA:   3'- uGC-AGC-CGCuuCGUCUCUagCAgCCC- -5'
23686 3' -55.4 NC_005261.1 + 62745 0.66 0.938762
Target:  5'- -gGagGGCGGccaggucgcuguGGgAGAGGUCGcCGGGg -3'
miRNA:   3'- ugCagCCGCU------------UCgUCUCUAGCaGCCC- -5'
23686 3' -55.4 NC_005261.1 + 23942 0.66 0.933909
Target:  5'- uCG-CGGCG-GGUucGGGGUCGUCGGc -3'
miRNA:   3'- uGCaGCCGCuUCGu-CUCUAGCAGCCc -5'
23686 3' -55.4 NC_005261.1 + 57188 0.66 0.933909
Target:  5'- -gGUCGGCGGgaagggGGgGGGGggCGcgCGGGu -3'
miRNA:   3'- ugCAGCCGCU------UCgUCUCuaGCa-GCCC- -5'
23686 3' -55.4 NC_005261.1 + 101687 0.66 0.933909
Target:  5'- -aGcCGGCGAAGCGGGcGUgGUCGa- -3'
miRNA:   3'- ugCaGCCGCUUCGUCUcUAgCAGCcc -5'
23686 3' -55.4 NC_005261.1 + 2608 0.66 0.928819
Target:  5'- cCGUCGGCG--GCGGGGc-CGcCGGGc -3'
miRNA:   3'- uGCAGCCGCuuCGUCUCuaGCaGCCC- -5'
23686 3' -55.4 NC_005261.1 + 23625 0.66 0.928819
Target:  5'- cCGg-GGCGcGGCGGGGGUCGggCGGc -3'
miRNA:   3'- uGCagCCGCuUCGUCUCUAGCa-GCCc -5'
23686 3' -55.4 NC_005261.1 + 97619 0.66 0.928819
Target:  5'- gGCGgagCGGgCGGAGCGGgcGGAgCGggcgCGGGu -3'
miRNA:   3'- -UGCa--GCC-GCUUCGUC--UCUaGCa---GCCC- -5'
23686 3' -55.4 NC_005261.1 + 121787 0.66 0.928819
Target:  5'- cGCGgcCGGCGGgcugGGCAGGGGgcgCGUggcUGGGc -3'
miRNA:   3'- -UGCa-GCCGCU----UCGUCUCUa--GCA---GCCC- -5'
23686 3' -55.4 NC_005261.1 + 56362 0.66 0.928819
Target:  5'- cCGgcacCGGCGAGGCgcacgucucccaGGAGcUCG-CGGGg -3'
miRNA:   3'- uGCa---GCCGCUUCG------------UCUCuAGCaGCCC- -5'
23686 3' -55.4 NC_005261.1 + 1002 0.66 0.928819
Target:  5'- gACGggGGCGGggGGCGGGGggCGggUGGGc -3'
miRNA:   3'- -UGCagCCGCU--UCGUCUCuaGCa-GCCC- -5'
23686 3' -55.4 NC_005261.1 + 26086 0.66 0.928819
Target:  5'- cGCGgcagCGGCGGcAGCAGAGGcagauccagCGgcCGGGu -3'
miRNA:   3'- -UGCa---GCCGCU-UCGUCUCUa--------GCa-GCCC- -5'
23686 3' -55.4 NC_005261.1 + 48156 0.66 0.923493
Target:  5'- gGCGagagagagCGGUGGcAGCGGGGGUgGaCGGGg -3'
miRNA:   3'- -UGCa-------GCCGCU-UCGUCUCUAgCaGCCC- -5'
23686 3' -55.4 NC_005261.1 + 121433 0.66 0.923493
Target:  5'- uACGgggCGGCGggGCGGgcaugGGGcCGUCGa- -3'
miRNA:   3'- -UGCa--GCCGCuuCGUC-----UCUaGCAGCcc -5'
23686 3' -55.4 NC_005261.1 + 23831 0.66 0.923493
Target:  5'- gGCGggcCGGCuAGGguGGGcUCGcCGGGg -3'
miRNA:   3'- -UGCa--GCCGcUUCguCUCuAGCaGCCC- -5'
23686 3' -55.4 NC_005261.1 + 23774 0.66 0.923493
Target:  5'- gGCGggcCGGCuAGGguGGGcUCGcCGGGg -3'
miRNA:   3'- -UGCa--GCCGcUUCguCUCuAGCaGCCC- -5'
23686 3' -55.4 NC_005261.1 + 134963 0.66 0.91793
Target:  5'- gGCGcCGGCGAcGCAGAcGG-CGaggaCGGGg -3'
miRNA:   3'- -UGCaGCCGCUuCGUCU-CUaGCa---GCCC- -5'
23686 3' -55.4 NC_005261.1 + 121496 0.66 0.91793
Target:  5'- cACGgggCGGCGggGCGGgcaugGGGcCGUCGa- -3'
miRNA:   3'- -UGCa--GCCGCuuCGUC-----UCUaGCAGCcc -5'
23686 3' -55.4 NC_005261.1 + 25288 0.66 0.91793
Target:  5'- gGCG-CGGUcuguGGCcguGAGcGUCGUCGGGg -3'
miRNA:   3'- -UGCaGCCGcu--UCGu--CUC-UAGCAGCCC- -5'
23686 3' -55.4 NC_005261.1 + 84953 0.66 0.91793
Target:  5'- --cUCGGCGGccGCcGAGG-CGUCGGGc -3'
miRNA:   3'- ugcAGCCGCUu-CGuCUCUaGCAGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.