miRNA display CGI


Results 1 - 20 of 525 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23688 3' -61.7 NC_005261.1 + 5468 0.65 0.653455
Target:  5'- -cCGAGCAgcccccgcuaucgcGCGCGCCggggggUAGCugGGGCc -3'
miRNA:   3'- ccGCUCGU--------------CGCGCGG------GUCGugCCUGu -5'
23688 3' -61.7 NC_005261.1 + 15178 0.65 0.653455
Target:  5'- cGGCG-GCGGCGCccgcgggaaacgccGCCaucGCGCGGuCGu -3'
miRNA:   3'- -CCGCuCGUCGCG--------------CGGgu-CGUGCCuGU- -5'
23688 3' -61.7 NC_005261.1 + 18949 0.66 0.596815
Target:  5'- aGGCGGGguGCuccGCaGCUCAGUgGCGGugGg -3'
miRNA:   3'- -CCGCUCguCG---CG-CGGGUCG-UGCCugU- -5'
23688 3' -61.7 NC_005261.1 + 74818 0.66 0.596815
Target:  5'- uGGCGgaGGUGGC-CGCCguGCucGCGGACc -3'
miRNA:   3'- -CCGC--UCGUCGcGCGGguCG--UGCCUGu -5'
23688 3' -61.7 NC_005261.1 + 76419 0.66 0.596815
Target:  5'- cGGCGcguGCAGaGCGCCgGcGCcaugGCGGACGc -3'
miRNA:   3'- -CCGCu--CGUCgCGCGGgU-CG----UGCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 44723 0.66 0.596815
Target:  5'- cGCGcGCAGgGCGCUgCAGCugGGcCc -3'
miRNA:   3'- cCGCuCGUCgCGCGG-GUCGugCCuGu -5'
23688 3' -61.7 NC_005261.1 + 1419 0.66 0.596815
Target:  5'- cGGCGggGGCGGCGCccGCCucCAGCACcagcGGCGg -3'
miRNA:   3'- -CCGC--UCGUCGCG--CGG--GUCGUGc---CUGU- -5'
23688 3' -61.7 NC_005261.1 + 98725 0.66 0.596815
Target:  5'- cGGCcuuggGGGCA-CGCGgCC-GCGCGGGCGu -3'
miRNA:   3'- -CCG-----CUCGUcGCGCgGGuCGUGCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 18713 0.66 0.60673
Target:  5'- cGGCGaAGCAGagauCGUCgGGCGCGGGg- -3'
miRNA:   3'- -CCGC-UCGUCgc--GCGGgUCGUGCCUgu -5'
23688 3' -61.7 NC_005261.1 + 39198 0.66 0.595825
Target:  5'- cGGCGAGCAGC-CGCaCCGGUagccgccAUGGcCc -3'
miRNA:   3'- -CCGCUCGUCGcGCG-GGUCG-------UGCCuGu -5'
23688 3' -61.7 NC_005261.1 + 86589 0.66 0.596815
Target:  5'- cGGCG-GCGGCGcCGUCCuuGGCGuCGGcCGc -3'
miRNA:   3'- -CCGCuCGUCGC-GCGGG--UCGU-GCCuGU- -5'
23688 3' -61.7 NC_005261.1 + 16051 0.66 0.596815
Target:  5'- -uUGGGCAGCGgGCCCgcgccgagccGGCGCGuguaGACGa -3'
miRNA:   3'- ccGCUCGUCGCgCGGG----------UCGUGC----CUGU- -5'
23688 3' -61.7 NC_005261.1 + 127016 0.66 0.596815
Target:  5'- cGCaGGCGGCG-GCCCgAGCAgGGAg- -3'
miRNA:   3'- cCGcUCGUCGCgCGGG-UCGUgCCUgu -5'
23688 3' -61.7 NC_005261.1 + 127839 0.66 0.596815
Target:  5'- cGCGAGCAGCGgacggggcgGUCgCGGCGCcaGGGCAc -3'
miRNA:   3'- cCGCUCGUCGCg--------CGG-GUCGUG--CCUGU- -5'
23688 3' -61.7 NC_005261.1 + 106545 0.66 0.596815
Target:  5'- cGGCG-GCGGcCGCGUCCgGGC-CGGcGCGc -3'
miRNA:   3'- -CCGCuCGUC-GCGCGGG-UCGuGCC-UGU- -5'
23688 3' -61.7 NC_005261.1 + 73807 0.66 0.596815
Target:  5'- cGGCGcGCAGaagccgcgccCGCGCCUAGCcCGG-Cu -3'
miRNA:   3'- -CCGCuCGUC----------GCGCGGGUCGuGCCuGu -5'
23688 3' -61.7 NC_005261.1 + 104390 0.66 0.605738
Target:  5'- aGGcCGAGaGGCGCGCCauaaAGCGCGccgaaacGGCGc -3'
miRNA:   3'- -CC-GCUCgUCGCGCGGg---UCGUGC-------CUGU- -5'
23688 3' -61.7 NC_005261.1 + 135738 0.66 0.596815
Target:  5'- cGUGAuGCuGGCGCGCCuCAGCcgcGCGGuGCGc -3'
miRNA:   3'- cCGCU-CG-UCGCGCGG-GUCG---UGCC-UGU- -5'
23688 3' -61.7 NC_005261.1 + 57971 0.66 0.596815
Target:  5'- cGGCGAcGCAgGCGCGCgCGGC-CGcGCc -3'
miRNA:   3'- -CCGCU-CGU-CGCGCGgGUCGuGCcUGu -5'
23688 3' -61.7 NC_005261.1 + 58956 0.66 0.596815
Target:  5'- cGGCcAGCAGCGC-CUCGGCGCccGCGu -3'
miRNA:   3'- -CCGcUCGUCGCGcGGGUCGUGccUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.