miRNA display CGI


Results 1 - 20 of 525 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23688 3' -61.7 NC_005261.1 + 231 0.71 0.346888
Target:  5'- cGCGGGCcccgcgAGCGgGCCCGGCuGCGGcgGCGg -3'
miRNA:   3'- cCGCUCG------UCGCgCGGGUCG-UGCC--UGU- -5'
23688 3' -61.7 NC_005261.1 + 333 0.73 0.258987
Target:  5'- cGGCGGcuGCGGCGgcccgcaGCCCGGCGCGGcccgGCGg -3'
miRNA:   3'- -CCGCU--CGUCGCg------CGGGUCGUGCC----UGU- -5'
23688 3' -61.7 NC_005261.1 + 529 0.68 0.481408
Target:  5'- gGGCGGGCGGgGgGC--AGgGCGGACGg -3'
miRNA:   3'- -CCGCUCGUCgCgCGggUCgUGCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 976 0.69 0.472243
Target:  5'- cGGCGGGCcGCGCGCagAGCGgaGGAg- -3'
miRNA:   3'- -CCGCUCGuCGCGCGggUCGUg-CCUgu -5'
23688 3' -61.7 NC_005261.1 + 1045 0.76 0.172439
Target:  5'- cGGCGGGCGGCgGCGUUagCGGCGCGGGgGg -3'
miRNA:   3'- -CCGCUCGUCG-CGCGG--GUCGUGCCUgU- -5'
23688 3' -61.7 NC_005261.1 + 1090 0.68 0.528439
Target:  5'- gGGCGAGCccGGCucguCGUCCgaGGaCGCGGACGa -3'
miRNA:   3'- -CCGCUCG--UCGc---GCGGG--UC-GUGCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 1186 0.66 0.636555
Target:  5'- cGGCcgGGGCcggGGcCGgGCgCGGCGCGGACc -3'
miRNA:   3'- -CCG--CUCG---UC-GCgCGgGUCGUGCCUGu -5'
23688 3' -61.7 NC_005261.1 + 1419 0.66 0.596815
Target:  5'- cGGCGggGGCGGCGCccGCCucCAGCACcagcGGCGg -3'
miRNA:   3'- -CCGC--UCGUCGCG--CGG--GUCGUGc---CUGU- -5'
23688 3' -61.7 NC_005261.1 + 1564 0.7 0.377911
Target:  5'- cGGcCGcAGCGGCGCGCCgAGCccccaGCGGuugGCGg -3'
miRNA:   3'- -CC-GC-UCGUCGCGCGGgUCG-----UGCC---UGU- -5'
23688 3' -61.7 NC_005261.1 + 1696 0.71 0.353707
Target:  5'- cGGC-AGCAcGCGCuGCCgguacucgcgcggCGGCACGGGCAc -3'
miRNA:   3'- -CCGcUCGU-CGCG-CGG-------------GUCGUGCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 1738 0.66 0.626607
Target:  5'- cGCGGuGC-GCGgGCCCAgGCGCGuGGCc -3'
miRNA:   3'- cCGCU-CGuCGCgCGGGU-CGUGC-CUGu -5'
23688 3' -61.7 NC_005261.1 + 1881 0.72 0.317731
Target:  5'- aGGCcAGCacGGCGCGCgCCAGCGCGcGCc -3'
miRNA:   3'- -CCGcUCG--UCGCGCG-GGUCGUGCcUGu -5'
23688 3' -61.7 NC_005261.1 + 2106 0.71 0.332074
Target:  5'- cGCGAGCAgcagcacgcccuGCGCGCCgAGCGCGcuCAc -3'
miRNA:   3'- cCGCUCGU------------CGCGCGGgUCGUGCcuGU- -5'
23688 3' -61.7 NC_005261.1 + 2186 0.66 0.636555
Target:  5'- cGGCGcucAGCAGCaGCcgguuGCCCAGCgccGCGaGCAg -3'
miRNA:   3'- -CCGC---UCGUCG-CG-----CGGGUCG---UGCcUGU- -5'
23688 3' -61.7 NC_005261.1 + 2279 0.68 0.490659
Target:  5'- cGcCGGGCGGCGC-CgCCAGCGCcuccccGGGCAg -3'
miRNA:   3'- cC-GCUCGUCGCGcG-GGUCGUG------CCUGU- -5'
23688 3' -61.7 NC_005261.1 + 2399 0.76 0.176721
Target:  5'- cGGCGAGCGcgcccGCGgGCCCcGCGCGGcgGCGg -3'
miRNA:   3'- -CCGCUCGU-----CGCgCGGGuCGUGCC--UGU- -5'
23688 3' -61.7 NC_005261.1 + 2465 0.68 0.499991
Target:  5'- aGGCGAGCGccGgGCGCCagGGCuCGGGgAa -3'
miRNA:   3'- -CCGCUCGU--CgCGCGGg-UCGuGCCUgU- -5'
23688 3' -61.7 NC_005261.1 + 2530 0.72 0.317731
Target:  5'- gGGCG-GCAGUaggccgccaGCGCCgCGGCGCuGGGCGc -3'
miRNA:   3'- -CCGCuCGUCG---------CGCGG-GUCGUG-CCUGU- -5'
23688 3' -61.7 NC_005261.1 + 2615 0.73 0.277521
Target:  5'- cGGCGgggccgccgGGCGGCaugGgGCCCAGCacGCGGGCGg -3'
miRNA:   3'- -CCGC---------UCGUCG---CgCGGGUCG--UGCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 2679 0.68 0.528439
Target:  5'- uGGgGAcccgGCGGCGCGCcggcuuuuggCCGGCGcCGGGCc -3'
miRNA:   3'- -CCgCU----CGUCGCGCG----------GGUCGU-GCCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.